Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
AnnotationWsJob	10	13	13	0.00%	Show methods

Class AnnotationWsJob

Class AnnotationWsJob	Line # 10	Total Statements 13	Complexity 13	TOTAL Coverage 0.00%
getStartPos() : int   getStartPos() : int	2727	1.01	1.01	0.0 0.00%
setStartPos(int) : void   setStartPos(int) : void	3232	1.01	1.01	0.0 0.00%
isTransferSequenceFeatures() : boolean   isTransferSequenceFeatures() : boolean	4444	1.01	1.01	0.0 0.00%
setTransferSequenceFeatures(boolean) : void   setTransferSequenceFeatures(boolean) : void	4949	1.01	1.01	0.0 0.00%
getAnnotation() : List<AlignmentAnnotation>   getAnnotation() : List<AlignmentAnnotation>	5454	1.01	1.01	0.0 0.00%
setAnnotation(List<AlignmentAnnotation>) : void   setAnnotation(List<AlignmentAnnotation>) : void	5959	1.01	1.01	0.0 0.00%
hasResults() : boolean   hasResults() : boolean	6464	1.01	1.01	0.0 0.00%
getSeqs() : List<SequenceI>   getSeqs() : List<SequenceI>	7171	1.01	1.01	0.0 0.00%
setSeqs(List<SequenceI>) : void   setSeqs(List<SequenceI>) : void	7676	1.01	1.01	0.0 0.00%
getSeqNames() : Map<String, SequenceI>   getSeqNames() : Map<String, SequenceI>	8181	1.01	1.01	0.0 0.00%
setSeqNames(Map<String, SequenceI>) : void   setSeqNames(Map<String, SequenceI>) : void	8686	1.01	1.01	0.0 0.00%
setFeatureRenderer(FeatureRenderer) : void   setFeatureRenderer(FeatureRenderer) : void	9696	1.01	1.01	0.0 0.00%
getFeatureRenderer() : FeatureRenderer   getFeatureRenderer() : FeatureRenderer	100100	1.01	1.01	0.0 0.00%

 

Contributing tests

Source view

1		package jalview.ws.gui;
2
3		import jalview.api.FeatureRenderer;
4		import jalview.datamodel.AlignmentAnnotation;
5		import jalview.datamodel.SequenceI;
6
7		import java.util.List;
8		import java.util.Map;
9
		0% Uncovered Elements: 26 (26) Complexity: 13 Complexity Density: 1
10		public class AnnotationWsJob extends WsJob
11		{
12		/**
13		* sequences (anonymised)
14		*/
15		List<SequenceI> seqs;
16
17		/**
18		* mapping to original sequences
19		*/
20		Map<String, SequenceI> seqNames;
21
22		/**
23		* first column in the segment of the alignment view that was submitted
24		*/
25		int startPos;
26
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
27	0	public int getStartPos()...
28		{
29	0	return startPos;
30		}
31
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
32	0	public void setStartPos(int startPos)...
33		{
34	0	this.startPos = startPos;
35		}
36
37		/**
38		* outputs
39		*/
40		List<AlignmentAnnotation> annotation = null;
41
42		boolean transferSequenceFeatures = false;
43
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
44	0	public boolean isTransferSequenceFeatures()...
45		{
46	0	return transferSequenceFeatures;
47		}
48
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
49	0	public void setTransferSequenceFeatures(boolean transferSequenceFeatures)...
50		{
51	0	this.transferSequenceFeatures = transferSequenceFeatures;
52		}
53
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
54	0	public List<AlignmentAnnotation> getAnnotation()...
55		{
56	0	return annotation;
57		}
58
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
59	0	public void setAnnotation(List<AlignmentAnnotation> annotation)...
60		{
61	0	this.annotation = annotation;
62		}
63
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
64	0	@Override...
65		public boolean hasResults()
66		{
67	0	return (isSubmitted() && isFinished()
68		&& (annotation != null || transferSequenceFeatures));
69		}
70
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
71	0	public List<SequenceI> getSeqs()...
72		{
73	0	return seqs;
74		}
75
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
76	0	public void setSeqs(List<SequenceI> seqs)...
77		{
78	0	this.seqs = seqs;
79		}
80
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
81	0	public Map<String, SequenceI> getSeqNames()...
82		{
83	0	return seqNames;
84		}
85
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
86	0	public void setSeqNames(Map<String, SequenceI> seqNames)...
87		{
88	0	this.seqNames = seqNames;
89		}
90
91		/**
92		* configured by the WS framework just before results are collected
93		*/
94		FeatureRenderer featureRenderer;
95
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
96	0	public void setFeatureRenderer(FeatureRenderer fr)...
97		{
98	0	this.featureRenderer = fr;
99		}
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
100	0	public FeatureRenderer getFeatureRenderer()...
101		{
102		// TODO Auto-generated method stub
103	0	return featureRenderer;
104		}
105
106		}