Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
ServiceWithParameters	12	21	22	0.3958333439.6%	Show methods
ServiceWithParameters.ServiceClient	89	0	0	-1.0 -	Show methods

Class ServiceWithParameters

Class ServiceWithParameters	Line # 12	Total Statements 21	Complexity 22	TOTAL Coverage 0.3958333439.6%
ServiceWithParameters(String,String,String,String,String)   ServiceWithParameters(String,String,String,String,String)	1717	1.01	1.01	1.0 1.0100%
getAlignAnalysisUI() : jalview.ws.uimodel.AlignAnalysisUIText   getAlignAnalysisUI() : jalview.ws.uimodel.AlignAnalysisUIText	2525	1.01	1.01	1.0 1.0100%
setAlignAnalysisUI(jalview.ws.uimodel.AlignAnalysisUIText) : void   setAlignAnalysisUI(jalview.ws.uimodel.AlignAnalysisUIText) : void	3030	1.01	1.01	1.0 1.0100%
isInteractiveUpdate() : boolean   isInteractiveUpdate() : boolean	3636	1.01	1.01	1.0 1.0100%
isProteinService() : boolean   isProteinService() : boolean	4242	1.01	2.02	0.0 0.00%
isNucleotideService() : boolean   isNucleotideService() : boolean	4747	1.01	2.02	0.0 0.00%
isNeedsAlignedSequences() : boolean   isNeedsAlignedSequences() : boolean	5252	1.01	2.02	0.0 0.00%
isAlignmentAnalysis() : boolean   isAlignmentAnalysis() : boolean	5757	1.01	2.02	0.0 0.00%
isFilterSymbols() : boolean   isFilterSymbols() : boolean	6262	1.01	2.02	0.0 0.00%
getMinimumInputSequences() : int   getMinimumInputSequences() : int	6767	1.01	2.02	0.0 0.00%
getNameURI() : String   getNameURI() : String	7272	1.01	1.01	0.0 0.00%
getUri() : String   getUri() : String	7777	1.01	2.02	0.6666667 0.666666766.7%
attachWSMenuEntry(JMenu,AlignFrame) : void   attachWSMenuEntry(JMenu,AlignFrame) : void	9696	9.09	3.03	0.7777778 0.777777877.8%

 

Class ServiceWithParameters.ServiceClient

Class ServiceWithParameters.ServiceClient	Line # 89	Total Statements 0	Complexity 0	TOTAL Coverage -1.0 -

 

Contributing tests

Source view

1		package jalview.ws.api;
2
3		import jalview.bin.Cache;
4		import jalview.bin.Console;
5		import jalview.gui.AlignFrame;
6		import jalview.ws.jws2.MsaWSClient;
7		import jalview.ws.jws2.SequenceAnnotationWSClient;
8		import jalview.ws.params.ParamManager;
9
10		import javax.swing.JMenu;
11
		39.6% Uncovered Elements: 29 (48) Complexity: 22 Complexity Density: 1.05
12		public abstract class ServiceWithParameters extends UIinfo
13		{
14
15		protected jalview.ws.uimodel.AlignAnalysisUIText aaui;
16
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
17	570	public ServiceWithParameters(String serviceType, String action,...
18		String name, String description, String hosturl)
19		{
20	570	super(serviceType, action, name, description, hosturl);
21		}
22
23		public abstract void initParamStore(ParamManager userParameterStore);
24
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
25	12289	public jalview.ws.uimodel.AlignAnalysisUIText getAlignAnalysisUI()...
26		{
27	12289	return aaui;
28		}
29
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
30	570	public void setAlignAnalysisUI(...
31		jalview.ws.uimodel.AlignAnalysisUIText aaui)
32		{
33	570	this.aaui = aaui;
34		}
35
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
36	12289	public boolean isInteractiveUpdate()...
37		{
38	12289	return aaui != null && aaui.isAA();
39		}
40		// config flags for SeqAnnotationServiceCalcWorker
41
		0% Uncovered Elements: 3 (3) Complexity: 2 Complexity Density: 2
42	0	public boolean isProteinService()...
43		{
44	0	return aaui == null ? true : aaui.isPr();
45		}
46
		0% Uncovered Elements: 3 (3) Complexity: 2 Complexity Density: 2
47	0	public boolean isNucleotideService()...
48		{
49	0	return aaui == null ? false : aaui.isNa();
50		}
51
		0% Uncovered Elements: 3 (3) Complexity: 2 Complexity Density: 2
52	0	public boolean isNeedsAlignedSequences()...
53		{
54	0	return aaui == null ? false : aaui.isNeedsAlignedSeqs();
55		}
56
		0% Uncovered Elements: 3 (3) Complexity: 2 Complexity Density: 2
57	0	public boolean isAlignmentAnalysis()...
58		{
59	0	return aaui == null ? false : aaui.isAA();
60		}
61
		0% Uncovered Elements: 3 (3) Complexity: 2 Complexity Density: 2
62	0	public boolean isFilterSymbols()...
63		{
64	0	return aaui != null ? aaui.isFilterSymbols() : true;
65		}
66
		0% Uncovered Elements: 3 (3) Complexity: 2 Complexity Density: 2
67	0	public int getMinimumInputSequences()...
68		{
69	0	return aaui != null ? aaui.getMinimumSequences() : 1;
70		}
71
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
72	0	public String getNameURI()...
73		{
74	0	return "java:" + getName();
75		}
76
		66.7% Uncovered Elements: 1 (3) Complexity: 2 Complexity Density: 2
77	1144	public String getUri()...
78		{
79		// TODO verify that service parameter sets in projects are consistent with
80		// Jalview 2.10.4
81		// this is only valid for Jaba 1.0 - this formula might have to change!
82	1144	return getHostURL()
83	1144	+ (getHostURL().lastIndexOf("/") == (getHostURL().length() - 1)
84		? ""
85		: "/")
86		+ getName();
87		}
88
		- Uncovered Elements: 0 (0) Complexity: 0 Complexity Density: -
89		protected enum ServiceClient
90		{
91		MSAWSCLIENT, SEQUENCEANNOTATIONWSCLIENT;
92		};
93
94		protected ServiceClient style = null;
95
		77.8% Uncovered Elements: 2 (9) Complexity: 3 Complexity Density: 0.33
96	12289	public void attachWSMenuEntry(JMenu atpoint, AlignFrame alignFrame)...
97		{
98	12289	switch (style)
99		{
100	9141	case MSAWSCLIENT:
101	9141	new MsaWSClient().attachWSMenuEntry(atpoint, this, alignFrame);
102	9141	break;
103	3148	case SEQUENCEANNOTATIONWSCLIENT:
104	3148	new SequenceAnnotationWSClient().attachWSMenuEntry(atpoint, this,
105		alignFrame);
106	3148	break;
107	0	default:
108	0	Console.warn("Implementation error ? Service " + getName()
109		+ " has Unknown service style " + style);
110		}
111		}
112		}