Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
Feature	59	17	16	0.941176594.1%	Show methods
Feature.OtherData	283	6	6	1.0100%	Show methods

Class Feature

Class Feature	Line # 59	Total Statements 17	Complexity 16	TOTAL Coverage 0.941176594.1%
getOtherData() : List<Feature.OtherData>   getOtherData() : List<Feature.OtherData>	102102	3.03	2.02	1.0 1.0100%
getBegin() : int   getBegin() : int	113113	1.01	1.01	1.0 1.0100%
setBegin(int) : void   setBegin(int) : void	121121	1.01	1.01	1.0 1.0100%
getEnd() : int   getEnd() : int	129129	1.01	1.01	1.0 1.0100%
setEnd(int) : void   setEnd(int) : void	137137	1.01	1.01	1.0 1.0100%
getType() : String   getType() : String	149149	1.01	1.01	1.0 1.0100%
setType(String) : void   setType(String) : void	161161	1.01	1.01	1.0 1.0100%
getDescription() : String   getDescription() : String	173173	1.01	1.01	1.0 1.0100%
setDescription(String) : void   setDescription(String) : void	185185	1.01	1.01	1.0 1.0100%
getStatus() : String   getStatus() : String	197197	1.01	1.01	1.0 1.0100%
setStatus(String) : void   setStatus(String) : void	209209	1.01	1.01	0.0 0.00%
getFeatureGroup() : String   getFeatureGroup() : String	221221	1.01	1.01	1.0 1.0100%
setFeatureGroup(String) : void   setFeatureGroup(String) : void	233233	1.01	1.01	1.0 1.0100%
getScore() : Float   getScore() : Float	245245	1.01	1.01	1.0 1.0100%
setScore(Float) : void   setScore(Float) : void	257257	1.01	1.01	1.0 1.0100%

 

Class Feature.OtherData

Class Feature.OtherData	Line # 283	Total Statements 6	Complexity 6	TOTAL Coverage 1.0100%
getKey() : String   getKey() : String	304304	1.01	1.01	1.0 1.0100%
setKey(String) : void   setKey(String) : void	316316	1.01	1.01	1.0 1.0100%
getKey2() : String   getKey2() : String	328328	1.01	1.01	1.0 1.0100%
setKey2(String) : void   setKey2(String) : void	341341	1.01	1.01	1.0 1.0100%
getValue() : String   getValue() : String	353353	1.01	1.01	1.0 1.0100%
setValue(String) : void   setValue(String) : void	365365	1.01	1.01	1.0 1.0100%

 

Contributing tests

Contributing tests

Select all

	Test contribution	Test	Result	Actions
	0.95652175	jalview.project.Jalview2xmlTests.testSaveLoadFeatureColoursAndFiltersjalview.project.Jalview2xmlTests.testSaveLoadFeatureColoursAndFilters	1PASS
	0.9130435	jalview.project.Jalview2xmlTests.testStoreAndRecoverReferenceSeqSettingsjalview.project.Jalview2xmlTests.testStoreAndRecoverReferenceSeqSettings	1PASS
	0.9130435	jalview.project.Jalview2xmlTests.testStoreAndRecoverExpandedviewsjalview.project.Jalview2xmlTests.testStoreAndRecoverExpandedviews	1PASS
	0.9130435	jalview.project.Jalview2xmlTests.testSaveAndLoadAnnotationBasedTreejalview.project.Jalview2xmlTests.testSaveAndLoadAnnotationBasedTree	1PASS
	0.9130435	jalview.project.Jalview2xmlTests.testSaveAndLoadAnnotationsPropertiesjalview.project.Jalview2xmlTests.testSaveAndLoadAnnotationsProperties	1PASS
	0.67391306	jalview.project.Jalview2xmlTests.testStoreAndRecoverPDBEntryjalview.project.Jalview2xmlTests.testStoreAndRecoverPDBEntry	1PASS
	0.67391306	jalview.io.AnnotatedPDBFileInputTest.testJalviewProjectRelocationAnnotationjalview.io.AnnotatedPDBFileInputTest.testJalviewProjectRelocationAnnotation	1PASS
	0.5652174	jalview.project.Jalview2xmlTests.viewRefPdbAnnotationjalview.project.Jalview2xmlTests.viewRefPdbAnnotation	1PASS
	0.5652174	jalview.project.Jalview2xmlTests.gatherViewsHerejalview.project.Jalview2xmlTests.gatherViewsHere	1PASS
	0.5652174	jalview.project.Jalview2xmlTests.testCopyViewSettingsjalview.project.Jalview2xmlTests.testCopyViewSettings	1PASS
	0.5652174	jalview.project.Jalview2xmlTests.noDuplicatePdbMappingsMadejalview.project.Jalview2xmlTests.noDuplicatePdbMappingsMade	1PASS
	0.5217391	jalview.io.CrossRef2xmlTests.openCrossrefsForEnsemblTwicejalview.io.CrossRef2xmlTests.openCrossrefsForEnsemblTwice	1PASS

 

Source view

1		//
2		// This file was generated by the Eclipse Implementation of JAXB, v2.3.9
3		// See https://eclipse-ee4j.github.io/jaxb-ri
4		// Any modifications to this file will be lost upon recompilation of the source schema.
5		// Generated on: 2025.04.17 at 04:05:44 PM BST
6		//
7
8
9		package jalview.xml.binding.jalview;
10
11		import java.util.ArrayList;
12		import java.util.List;
13		import javax.xml.bind.annotation.XmlAccessType;
14		import javax.xml.bind.annotation.XmlAccessorType;
15		import javax.xml.bind.annotation.XmlAttribute;
16		import javax.xml.bind.annotation.XmlType;
17
18
19		/**
20		* <p>Java class for feature complex type</p>.
21		*
22		* <p>The following schema fragment specifies the expected content contained within this class.</p>
23		*
24		* <pre>
25		* &lt;complexType name="feature"&gt;
26		* &lt;complexContent&gt;
27		* &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
28		* &lt;sequence&gt;
29		* &lt;element name="otherData" maxOccurs="unbounded" minOccurs="0"&gt;
30		* &lt;complexType&gt;
31		* &lt;complexContent&gt;
32		* &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
33		* &lt;attribute name="key" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
34		* &lt;attribute name="key2" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
35		* &lt;attribute name="value" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
36		* &lt;/restriction&gt;
37		* &lt;/complexContent&gt;
38		* &lt;/complexType&gt;
39		* &lt;/element&gt;
40		* &lt;/sequence&gt;
41		* &lt;attribute name="begin" use="required" type="{http://www.w3.org/2001/XMLSchema}int" /&gt;
42		* &lt;attribute name="end" use="required" type="{http://www.w3.org/2001/XMLSchema}int" /&gt;
43		* &lt;attribute name="type" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
44		* &lt;attribute name="description" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
45		* &lt;attribute name="status" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
46		* &lt;attribute name="featureGroup" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
47		* &lt;attribute name="score" type="{http://www.w3.org/2001/XMLSchema}float" /&gt;
48		* &lt;/restriction&gt;
49		* &lt;/complexContent&gt;
50		* &lt;/complexType&gt;
51		* </pre>
52		*
53		*
54		*/
55		@XmlAccessorType(XmlAccessType.FIELD)
56		@XmlType(name = "feature", namespace = "www.jalview.org", propOrder = {
57		"otherData"
58		})
		94.1% Uncovered Elements: 2 (34) Complexity: 16 Complexity Density: 0.94
59		public class Feature {
60
61		protected List<Feature.OtherData> otherData;
62		@XmlAttribute(name = "begin", required = true)
63		protected int begin;
64		@XmlAttribute(name = "end", required = true)
65		protected int end;
66		@XmlAttribute(name = "type", required = true)
67		protected String type;
68		@XmlAttribute(name = "description")
69		protected String description;
70		@XmlAttribute(name = "status")
71		protected String status;
72		@XmlAttribute(name = "featureGroup")
73		protected String featureGroup;
74		@XmlAttribute(name = "score")
75		protected Float score;
76
77		/**
78		* Gets the value of the otherData property.
79		*
80		* <p>This accessor method returns a reference to the live list,
81		* not a snapshot. Therefore any modification you make to the
82		* returned list will be present inside the JAXB object.
83		* This is why there is not a <CODE>set</CODE> method for the otherData property.</p>
84		*
85		* <p>
86		* For example, to add a new item, do as follows:
87		* </p>
88		* <pre>
89		* getOtherData().add(newItem);
90		* </pre>
91		*
92		*
93		* <p>
94		* Objects of the following type(s) are allowed in the list
95		* {@link Feature.OtherData }
96		* </p>
97		*
98		*
99		* @return
100		* The value of the otherData property.
101		*/
		100% Uncovered Elements: 0 (5) Complexity: 2 Complexity Density: 0.67
102	1212103	public List<Feature.OtherData> getOtherData() {...
103	1212103	if (otherData == null) {
104	15962	otherData = new ArrayList<Feature.OtherData>();
105		}
106	1212103	return this.otherData;
107		}
108
109		/**
110		* Gets the value of the begin property.
111		*
112		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
113	146685	public int getBegin() {...
114	146685	return begin;
115		}
116
117		/**
118		* Sets the value of the begin property.
119		*
120		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
121	16188	public void setBegin(int value) {...
122	16188	this.begin = value;
123		}
124
125		/**
126		* Gets the value of the end property.
127		*
128		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
129	146685	public int getEnd() {...
130	146685	return end;
131		}
132
133		/**
134		* Sets the value of the end property.
135		*
136		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
137	16188	public void setEnd(int value) {...
138	16188	this.end = value;
139		}
140
141		/**
142		* Gets the value of the type property.
143		*
144		* @return
145		* possible object is
146		* {@link String }
147		*
148		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
149	146685	public String getType() {...
150	146685	return type;
151		}
152
153		/**
154		* Sets the value of the type property.
155		*
156		* @param value
157		* allowed object is
158		* {@link String }
159		*
160		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
161	16188	public void setType(String value) {...
162	16188	this.type = value;
163		}
164
165		/**
166		* Gets the value of the description property.
167		*
168		* @return
169		* possible object is
170		* {@link String }
171		*
172		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
173	146685	public String getDescription() {...
174	146685	return description;
175		}
176
177		/**
178		* Sets the value of the description property.
179		*
180		* @param value
181		* allowed object is
182		* {@link String }
183		*
184		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
185	16188	public void setDescription(String value) {...
186	16188	this.description = value;
187		}
188
189		/**
190		* Gets the value of the status property.
191		*
192		* @return
193		* possible object is
194		* {@link String }
195		*
196		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
197	146685	public String getStatus() {...
198	146685	return status;
199		}
200
201		/**
202		* Sets the value of the status property.
203		*
204		* @param value
205		* allowed object is
206		* {@link String }
207		*
208		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
209	0	public void setStatus(String value) {...
210	0	this.status = value;
211		}
212
213		/**
214		* Gets the value of the featureGroup property.
215		*
216		* @return
217		* possible object is
218		* {@link String }
219		*
220		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
221	146685	public String getFeatureGroup() {...
222	146685	return featureGroup;
223		}
224
225		/**
226		* Sets the value of the featureGroup property.
227		*
228		* @param value
229		* allowed object is
230		* {@link String }
231		*
232		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
233	16188	public void setFeatureGroup(String value) {...
234	16188	this.featureGroup = value;
235		}
236
237		/**
238		* Gets the value of the score property.
239		*
240		* @return
241		* possible object is
242		* {@link Float }
243		*
244		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
245	146685	public Float getScore() {...
246	146685	return score;
247		}
248
249		/**
250		* Sets the value of the score property.
251		*
252		* @param value
253		* allowed object is
254		* {@link Float }
255		*
256		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
257	16188	public void setScore(Float value) {...
258	16188	this.score = value;
259		}
260
261
262		/**
263		* <p>Java class for anonymous complex type</p>.
264		*
265		* <p>The following schema fragment specifies the expected content contained within this class.</p>
266		*
267		* <pre>
268		* &lt;complexType&gt;
269		* &lt;complexContent&gt;
270		* &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
271		* &lt;attribute name="key" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
272		* &lt;attribute name="key2" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
273		* &lt;attribute name="value" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
274		* &lt;/restriction&gt;
275		* &lt;/complexContent&gt;
276		* &lt;/complexType&gt;
277		* </pre>
278		*
279		*
280		*/
281		@XmlAccessorType(XmlAccessType.FIELD)
282		@XmlType(name = "")
		100% Uncovered Elements: 0 (12) Complexity: 6 Complexity Density: 1
283		public static class OtherData {
284
285		@XmlAttribute(name = "key", required = true)
286		protected String key;
287		/**
288		* key2 may be used for a sub-attribute of key
289		*
290		*/
291		@XmlAttribute(name = "key2")
292		protected String key2;
293		@XmlAttribute(name = "value", required = true)
294		protected String value;
295
296		/**
297		* Gets the value of the key property.
298		*
299		* @return
300		* possible object is
301		* {@link String }
302		*
303		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
304	527376	public String getKey() {...
305	527376	return key;
306		}
307
308		/**
309		* Sets the value of the key property.
310		*
311		* @param value
312		* allowed object is
313		* {@link String }
314		*
315		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
316	10666	public void setKey(String value) {...
317	10666	this.key = value;
318		}
319
320		/**
321		* key2 may be used for a sub-attribute of key
322		*
323		* @return
324		* possible object is
325		* {@link String }
326		*
327		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
328	520651	public String getKey2() {...
329	520651	return key2;
330		}
331
332		/**
333		* Sets the value of the key2 property.
334		*
335		* @param value
336		* allowed object is
337		* {@link String }
338		*
339		* @see #getKey2()
340		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
341	20	public void setKey2(String value) {...
342	20	this.key2 = value;
343		}
344
345		/**
346		* Gets the value of the value property.
347		*
348		* @return
349		* possible object is
350		* {@link String }
351		*
352		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
353	527376	public String getValue() {...
354	527376	return value;
355		}
356
357		/**
358		* Sets the value of the value property.
359		*
360		* @param value
361		* allowed object is
362		* {@link String }
363		*
364		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
365	10666	public void setValue(String value) {...
366	10666	this.value = value;
367		}
368
369		}
370
371		}