Project Clover database Wed Dec 3 2025 13:28:34 GMT

Package jalview.analysis.scoremodels

Branches:

224

Statements:

445

Methods:

90

Classes:

9

Files:

9

LOC:

2,185

NCLOC:

1,207

Total complexity:

230

Complexity density:

0.52

Statements/Method:

4.94

Methods/Class:

10

Average method complexity:

2.56

Package	Files	Average Method Complexity	TOTAL Coverage
jalview.analysis.scoremodels jalview.analysis.scoremodels	9.0 9	2.5555556 2.56	0.7312253 0.731225373.1%

Class	Methods	Average Method Complexity	TOTAL Coverage
DistanceScoreModel DistanceScoreModel	2.0 2	1.0 1	0.0 0.00%
SmithWatermanModel SmithWatermanModel	7.0 7	1.5714285 1.57	0.0 0.00%
SimilarityParams SimilarityParams	9.0 9	2.2222223 2.22	0.265625 0.26562526.6%
SimilarityScoreModel SimilarityScoreModel	2.0 2	1.0 1	0.5 0.550%
SecondaryStructureDistanceModel SecondaryStructureDistanceModel	12.0 12	3.75 3.75	0.6392405 0.639240563.9%
PIDModel PIDModel	12.0 12	2.8333333 2.83	0.71028036 0.7102803671%
FeatureDistanceModel FeatureDistanceModel	10.0 10	2.5 2.5	0.88235295 0.8823529588.2%
ScoreModels ScoreModels	11.0 11	1.5454545 1.55	0.9230769 0.923076992.3%
ScoreMatrix ScoreMatrix	25.0 25	2.96 2.96	0.962963 0.96296396.3%