Build #4

Build and run tests under Java 11

Build: #4 was successful

Job: Clover and Tests was successful

Stages & jobs

  1. Default Stage

Test results

  • 2,146 tests in total
  • 3 tests were fixed
  • 6 minutes taken in total.

The following 2,146 tests have passed: 3 tests were fixed since the last build.

Show all tests on one page
Fixed tests 3
Status Test Duration
Successful CommandLineOperations testHeadlessModeOutputOperations(headless -open examples/uniref50.fa, -html, test/jalview/bin/test_uniref50_out.html, true, 4096, 15000, ) History
1 sec
Successful StructureChooserTest openStructureFileForSequenceTest(examples/uniref50.fa, FER1_SPIOL, examples/AlphaFold/AF-P00221-F1-model_v4.cif, Default, examples/AlphaFold/AF-P00221-F1-predicted_aligned_error_v4.json, true, false, JMOL, 15, 7, 1, ) History
1 sec
Successful Jalview2xmlTests noDuplicatePdbMappingsMade History
13 secs
All successful tests
Status Test Duration
Successful AAFrequencyTest testCalculate_noProfile History
< 1 sec
Successful AAFrequencyTest testCalculate_withProfile History
< 1 sec
Successful AAFrequencyTest testCompleteConsensus_ignoreGaps_noLogo History
< 1 sec
Successful AAFrequencyTest testCompleteConsensus_includeGaps_showLogo History
< 1 sec
Successful AAFrequencyTest testCompleteInformation History
< 1 sec
Successful AAFrequencyTest testExtractCdnaProfile History
< 1 sec
Successful AAFrequencyTest testExtractCdnaProfile_countGaps History
< 1 sec
Successful AAFrequencyTest testExtractHMMProfile History
< 1 sec
Successful AAFrequencyTest testExtractProfile History
< 1 sec
Successful AAFrequencyTest testExtractProfile_countGaps History
< 1 sec
Successful AAFrequencyTest testExtractSSProfileForSequenceGroup History
< 1 sec
Successful AAFrequencyTest testGetAnalogueCount History
< 1 sec
Successful AlignSeqTest testExtractGaps History
< 1 sec
Successful AlignSeqTest testGlobalAlignment History
< 1 sec
Successful AlignSeqTest testIndexEncode_nucleotide History
< 1 sec
Successful AlignSeqTest testIndexEncode_peptide History
< 1 sec
Successful AlignmentAnnotationUtilsTest testAsList History
< 1 sec
Successful AlignmentAnnotationUtilsTest testExtractSSSourceFromAnnotationDescription( , , ) History
< 1 sec
Successful AlignmentAnnotationUtilsTest testExtractSSSourceFromAnnotationDescription(, Alphafold, ) History
< 1 sec
Successful AlignmentAnnotationUtilsTest testExtractSSSourceFromAnnotationDescription(, JPred, ) History
< 1 sec
Successful AlignmentAnnotationUtilsTest testExtractSSSourceFromAnnotationDescription(, MyProvider, ) History
< 1 sec
Successful AlignmentAnnotationUtilsTest testExtractSSSourceFromAnnotationDescription(, PDB, 1ABC:A) History
< 1 sec
Successful AlignmentAnnotationUtilsTest testExtractSSSourceFromAnnotationDescription(, Swiss Model, ) History
< 1 sec
Successful AlignmentAnnotationUtilsTest testGetShownHiddenTypes_forSelectionGroup History
< 1 sec
Successful AlignmentAnnotationUtilsTest testGetShownHiddenTypes_noSequenceSelected History
< 1 sec
Successful AlignmentAnnotationUtilsTest testGetShownHiddenTypes_withGraphGroups History
< 1 sec
Successful AlignmentAnnotationUtilsTest testGetVisibleGraphGroups History
< 1 sec
Successful AlignmentSorterTest testSortByFeature_density History
< 1 sec
Successful AlignmentSorterTest testSortByFeature_score History
< 1 sec
Successful AlignmentUtilsTests testA3mInsertShifts History
< 1 sec
Successful AlignmentUtilsTests testAddMappedPositions History
< 1 sec
Successful AlignmentUtilsTests testAddMappedPositions_withStopCodon History
< 1 sec
Successful AlignmentUtilsTests testAddReferenceAnnotations History
< 1 sec
Successful AlignmentUtilsTests testAddReferenceContactMap History
< 1 sec
Successful AlignmentUtilsTests testAlignAsSameSequences History
< 1 sec
Successful AlignmentUtilsTests testAlignAsSameSequencesMultipleSubSeq History
< 1 sec
Successful AlignmentUtilsTests testAlignAs_alternateTranscriptsUngapped History
< 1 sec
Successful AlignmentUtilsTests testAlignProteinAsDna History
< 1 sec
Successful AlignmentUtilsTests testAlignProteinAsDna_incompleteStartCodon History
< 1 sec
Successful AlignmentUtilsTests testAlignSequenceAs_keepIntronGapsOnly History
< 1 sec
Successful AlignmentUtilsTests testAlignSequenceAs_mappedProteinProtein History
< 1 sec
Successful AlignmentUtilsTests testAlignSequenceAs_withMapping_noIntrons History
< 1 sec
Successful AlignmentUtilsTests testAlignSequenceAs_withMapping_withIntrons History
< 1 sec
Successful AlignmentUtilsTests testAlignSequenceAs_withMapping_withUnmappedProtein History
< 1 sec
Successful AlignmentUtilsTests testAlignSequenceAs_withTrailingPeptide History
< 1 sec
Successful AlignmentUtilsTests testExpandContext History
< 1 sec
Successful AlignmentUtilsTests testExpandContext_annotation History
< 1 sec
Successful AlignmentUtilsTests testFindCdsForProtein History
< 1 sec
Successful AlignmentUtilsTests testFindCdsForProtein_noUTR History
< 1 sec
Successful AlignmentUtilsTests testFindCdsPositions History
< 1 sec
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