Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
SearchServiceGuiHandler	29	107	40	0.00%	Show methods

Class SearchServiceGuiHandler

Class SearchServiceGuiHandler	Line # 29	Total Statements 107	Complexity 40	TOTAL Coverage 0.00%
SearchServiceGuiHandler(ActionI<?>,AlignFrame)   SearchServiceGuiHandler(ActionI<?>,AlignFrame)	4747	5.05	1.01	0.0 0.00%
taskStarted(TaskI<AlignmentI>,List<? extends JobI>) : void   taskStarted(TaskI<AlignmentI>,List<? extends JobI>) : void	5757	15.015	4.04	0.0 0.00%
taskStatusChanged(TaskI<AlignmentI>,JobStatus) : void   taskStatusChanged(TaskI<AlignmentI>,JobStatus) : void	8282	32.032	11.011	0.0 0.00%
taskCompleted(TaskI<AlignmentI>,AlignmentI) : void   taskCompleted(TaskI<AlignmentI>,AlignmentI) : void	128128	9.09	2.02	0.0 0.00%
displayResultsNewFrame(AlignmentI) : void   displayResultsNewFrame(AlignmentI) : void	148148	5.05	2.02	0.0 0.00%
taskException(TaskI<AlignmentI>,Exception) : void   taskException(TaskI<AlignmentI>,Exception) : void	161161	2.02	1.01	0.0 0.00%
subJobStatusChanged(TaskI<AlignmentI>,JobI,JobStatus) : void   subJobStatusChanged(TaskI<AlignmentI>,JobI,JobStatus) : void	169169	31.031	13.013	0.0 0.00%
subJobLogChanged(TaskI<AlignmentI>,JobI,String) : void   subJobLogChanged(TaskI<AlignmentI>,JobI,String) : void	211211	4.04	3.03	0.0 0.00%
subJobErrorLogChanged(TaskI<AlignmentI>,JobI,String) : void   subJobErrorLogChanged(TaskI<AlignmentI>,JobI,String) : void	223223	4.04	3.03	0.0 0.00%

 

Contributing tests

Source view

1		package jalview.ws2.gui;
2
3		import java.util.List;
4
5		import javax.swing.SwingUtilities;
6
7		import jalview.analysis.AlignmentUtils;
8		import jalview.bin.Console;
9		import jalview.datamodel.Alignment;
10		import jalview.datamodel.AlignmentAnnotation;
11		import jalview.datamodel.AlignmentI;
12		import jalview.datamodel.HiddenColumns;
13		import jalview.gui.AlignFrame;
14		import jalview.gui.Desktop;
15		import jalview.gui.JvOptionPane;
16		import jalview.gui.WebserviceInfo;
17		import jalview.util.ArrayUtils;
18		import jalview.util.MessageManager;
19		import jalview.ws2.actions.api.ActionI;
20		import jalview.ws2.actions.api.JobI;
21		import jalview.ws2.actions.api.TaskEventListener;
22		import jalview.ws2.actions.api.TaskI;
23		import jalview.ws2.api.JobStatus;
24		import jalview.ws2.api.WebService;
25		import jalview.ws2.helpers.WSClientTaskWrapper;
26
27		import static java.lang.String.format;
28
		0% Uncovered Elements: 138 (138) Complexity: 40 Complexity Density: 0.37
29		class SearchServiceGuiHandler implements TaskEventListener<AlignmentI>
30		{
31		private final AlignFrame parentFrame;
32
33		private final ActionI<?> action;
34
35		private final WebService<?> service;
36
37		private WebserviceInfo infoPanel;
38
39		private JobI[] jobs = new JobI[0];
40
41		private int[] tabs = new int[0];
42
43		private int[] logOffset = new int[0];
44
45		private int[] errLogOffset = new int[0];
46
		0% Uncovered Elements: 5 (5) Complexity: 1 Complexity Density: 0.2
47	0	public SearchServiceGuiHandler(ActionI<?> action, AlignFrame parentFrame)...
48		{
49	0	this.parentFrame = parentFrame;
50	0	this.action = action;
51	0	this.service = action.getWebService();
52	0	var info = String.format("%s search using service at %s%n%s",
53		service.getName(), service.getUrl(), service.getDescription());
54	0	this.infoPanel = new WebserviceInfo(service.getName(), info, false);
55		}
56
		0% Uncovered Elements: 21 (21) Complexity: 4 Complexity Density: 0.27
57	0	@Override...
58		public void taskStarted(TaskI<AlignmentI> source,
59		List<? extends JobI> subJobs)
60		{
61	0	Console.debug(format("task %s#%x started with %d sub-jobs",
62		service.getName(), source.getUid(), subJobs.size()));
63	0	jobs = subJobs.toArray(new JobI[subJobs.size()]);
64	0	tabs = new int[subJobs.size()];
65	0	logOffset = new int[subJobs.size()];
66	0	errLogOffset = new int[subJobs.size()];
67	0	for (int i = 0; i < subJobs.size(); i++)
68		{
69	0	JobI job = jobs[i];
70	0	int tabIndex = infoPanel.addJobPane();
71	0	tabs[i] = tabIndex;
72	0	infoPanel.setProgressName(format("region %d", i), tabIndex);
73	0	infoPanel.setProgressText(tabIndex, "Job details:\n");
74		// jobs should not have states other than invalid or ready at this point
75	0	if (job.getStatus() == JobStatus.INVALID)
76	0	infoPanel.setStatus(tabIndex, WebserviceInfo.STATE_STOPPED_OK);
77	0	else if (job.getStatus() == JobStatus.READY)
78	0	infoPanel.setStatus(tabIndex, WebserviceInfo.STATE_QUEUING);
79		}
80		}
81
		0% Uncovered Elements: 32 (32) Complexity: 11 Complexity Density: 0.34
82	0	@Override...
83		public void taskStatusChanged(TaskI<AlignmentI> source, JobStatus status)
84		{
85	0	Console.debug(format("task %s#%x status changed to %s",
86		service.getName(), source.getUid(), status));
87	0	switch (status)
88		{
89	0	case INVALID:
90	0	infoPanel.setVisible(false);
91	0	JvOptionPane.showMessageDialog(parentFrame,
92		MessageManager.getString("info.invalid_search_input"),
93		MessageManager.getString("info.invalid_search_input"),
94		JvOptionPane.INFORMATION_MESSAGE);
95	0	break;
96	0	case READY:
97	0	infoPanel.setthisService(new WSClientTaskWrapper(source));
98	0	infoPanel.setVisible(true);
99		// intentional no break
100	0	case SUBMITTED:
101	0	case QUEUED:
102	0	infoPanel.setStatus(WebserviceInfo.STATE_QUEUING);
103	0	break;
104	0	case RUNNING:
105	0	case UNKNOWN: // unsure what to do with unknown
106	0	infoPanel.setStatus(WebserviceInfo.STATE_RUNNING);
107	0	break;
108	0	case COMPLETED:
109	0	infoPanel.setProgressBar(
110		MessageManager.getString("status.collecting_job_results"),
111		jobs[0].getInternalId());
112	0	infoPanel.setStatus(WebserviceInfo.STATE_STOPPED_OK);
113	0	break;
114	0	case FAILED:
115	0	infoPanel.removeProgressBar(jobs[0].getInternalId());
116	0	infoPanel.setStatus(WebserviceInfo.STATE_STOPPED_ERROR);
117	0	break;
118	0	case CANCELLED:
119	0	infoPanel.setStatus(WebserviceInfo.STATE_CANCELLED_OK);
120	0	break;
121	0	case SERVER_ERROR:
122	0	infoPanel.removeProgressBar(jobs[0].getInternalId());
123	0	infoPanel.setStatus(WebserviceInfo.STATE_STOPPED_SERVERERROR);
124	0	break;
125		}
126		}
127
		0% Uncovered Elements: 11 (11) Complexity: 2 Complexity Density: 0.22
128	0	@Override...
129		public void taskCompleted(TaskI<AlignmentI> source, AlignmentI result)
130		{
131	0	Console.debug(format("task %s#%x completed", service.getName(),
132		source.getUid()));
133	0	SwingUtilities.invokeLater(
134		() -> infoPanel.removeProgressBar(jobs[0].getInternalId()));
135	0	if (result == null)
136		{
137	0	SwingUtilities.invokeLater(infoPanel::setFinishedNoResults);
138	0	return;
139		}
140	0	infoPanel.showResultsNewFrame.addActionListener(evt -> {
141		// copy alignment for each frame to have its own instance
142	0	var alnCpy = AlignmentUtils.deepCopyAlignment(result);
143	0	displayResultsNewFrame(alnCpy);
144		});
145	0	SwingUtilities.invokeLater(infoPanel::setResultsReady);
146		}
147
		0% Uncovered Elements: 7 (7) Complexity: 2 Complexity Density: 0.4
148	0	private void displayResultsNewFrame(AlignmentI aln)...
149		{
150	0	AlignFrame frame = new AlignFrame(aln, AlignFrame.DEFAULT_WIDTH,
151		AlignFrame.DEFAULT_HEIGHT);
152	0	frame.getFeatureRenderer().transferSettings(
153		parentFrame.getFeatureRenderer().getSettings());
154	0	var actionName = action.getName() != null ? action.getName() : "Search";
155	0	var title = String.format("%s %s of %s", service.getName(), actionName,
156		parentFrame.getTitle());
157	0	Desktop.addInternalFrame(frame, title, AlignFrame.DEFAULT_WIDTH,
158		AlignFrame.DEFAULT_HEIGHT);
159		}
160
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
161	0	@Override...
162		public void taskException(TaskI<AlignmentI> source, Exception e)
163		{
164	0	Console.error(format("Task %s#%x raised an exception.",
165		service.getName(), source.getUid()), e);
166	0	infoPanel.appendProgressText(e.getMessage());
167		}
168
		0% Uncovered Elements: 35 (35) Complexity: 13 Complexity Density: 0.42
169	0	@Override...
170		public void subJobStatusChanged(TaskI<AlignmentI> source, JobI job,
171		JobStatus status)
172		{
173	0	Console.debug(format("sub-job %x status changed to %s",
174		job.getInternalId(), status));
175	0	int i = ArrayUtils.indexOf(jobs, job);
176	0	assert i >= 0 : "job does not exist";
177	0	if (i < 0)
178		// safeguard that should not happen irl
179	0	return;
180	0	int wsStatus;
181	0	switch (status)
182		{
183	0	case INVALID:
184	0	case COMPLETED:
185	0	wsStatus = WebserviceInfo.STATE_STOPPED_OK;
186	0	break;
187	0	case READY:
188	0	case SUBMITTED:
189	0	case QUEUED:
190	0	wsStatus = WebserviceInfo.STATE_QUEUING;
191	0	break;
192	0	case RUNNING:
193	0	case UNKNOWN:
194	0	wsStatus = WebserviceInfo.STATE_RUNNING;
195	0	break;
196	0	case FAILED:
197	0	wsStatus = WebserviceInfo.STATE_STOPPED_ERROR;
198	0	break;
199	0	case CANCELLED:
200	0	wsStatus = WebserviceInfo.STATE_CANCELLED_OK;
201	0	break;
202	0	case SERVER_ERROR:
203	0	wsStatus = WebserviceInfo.STATE_STOPPED_SERVERERROR;
204	0	break;
205	0	default:
206	0	throw new AssertionError("Non-exhaustive switch statement");
207		}
208	0	infoPanel.setStatus(tabs[i], wsStatus);
209		}
210
		0% Uncovered Elements: 8 (8) Complexity: 3 Complexity Density: 0.75
211	0	@Override...
212		public void subJobLogChanged(TaskI<AlignmentI> source, JobI job,
213		String log)
214		{
215	0	int i = ArrayUtils.indexOf(jobs, job);
216	0	assert i >= 0 : "job does not exist";
217	0	if (i < 0)
218		// safeguard that should never happen
219	0	return;
220	0	infoPanel.appendProgressText(tabs[i], log.substring(logOffset[i]));
221		}
222
		0% Uncovered Elements: 8 (8) Complexity: 3 Complexity Density: 0.75
223	0	@Override...
224		public void subJobErrorLogChanged(TaskI<AlignmentI> source, JobI job,
225		String log)
226		{
227	0	int i = ArrayUtils.indexOf(jobs, job);
228	0	assert i >= 0 : "job does not exist";
229	0	if (i < 0)
230		// safeguard that should never happen
231	0	return;
232	0	infoPanel.appendProgressText(tabs[i], log.substring(errLogOffset[i]));
233		}
234		}