Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
Jws2ParamView	54	46	18	0.0281690142.8%	Show methods

Class Jws2ParamView

Class Jws2ParamView	Line # 54	Total Statements 46	Complexity 18	TOTAL Coverage 0.0281690142.8%
setUpJvOptionPane() : void   setUpJvOptionPane() : void	5757	2.02	1.01	0.0 0.00%
<clinit>, line 73()   <clinit>, line 73()	7373	1.01	1.01	1.0 1.0100%
setUpBeforeClass() : void   setUpBeforeClass() : void	8080	2.02	1.01	0.0 0.00%
windowClosing(WindowEvent) : void   windowClosing(WindowEvent) : void	160160	1.01	1.01	0.0 0.00%
testJws2Gui() : void   testJws2Gui() : void	9292	40.040	14.014	0.0 0.00%

 

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.ws.gui;
22
23		import java.util.Locale;
24
25		import jalview.bin.Cache;
26		import jalview.bin.Console;
27		import jalview.gui.JvOptionPane;
28		import jalview.gui.WsJobParameters;
29		import jalview.util.MessageManager;
30		import jalview.ws.api.ServiceWithParameters;
31		import jalview.ws.jabaws.JalviewJabawsTestUtils;
32		import jalview.ws.jws2.JabaPreset;
33		import jalview.ws.jws2.Jws2Discoverer;
34		import jalview.ws.jws2.jabaws2.Jws2Instance;
35		import jalview.ws.params.ArgumentI;
36		import jalview.ws.params.ParamDatastoreI;
37
38		import java.awt.BorderLayout;
39		import java.awt.event.WindowAdapter;
40		import java.awt.event.WindowEvent;
41		import java.util.ArrayList;
42		import java.util.Iterator;
43		import java.util.List;
44
45		import javax.swing.JFrame;
46		import javax.swing.JPanel;
47
48		import org.testng.annotations.BeforeClass;
49		import org.testng.annotations.Test;
50
51		import compbio.metadata.Preset;
52		import compbio.metadata.PresetManager;
53
		2.8% Uncovered Elements: 69 (71) Complexity: 18 Complexity Density: 0.39
54		public class Jws2ParamView
55		{
56
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
57	0	@BeforeClass(alwaysRun = true)...
58		public void setUpJvOptionPane()
59		{
60	0	JvOptionPane.setInteractiveMode(false);
61	0	JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
62		}
63
64		/**
65		* which services to test
66		*/
67		public static List<String> serviceTests = new ArrayList<>();
68
69		/**
70		* which presets to test for services
71		*/
72		public static List<String> presetTests = new ArrayList<>();
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
73	4	static...
74		{
75	4	serviceTests.add("AAConWS".toLowerCase(Locale.ROOT));
76		}
77
78		public static Jws2Discoverer disc = null;
79
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
80	0	@BeforeClass(alwaysRun = true)...
81		public static void setUpBeforeClass() throws Exception
82		{
83	0	Cache.loadProperties("test/jalview/io/testProps.jvprops");
84	0	disc = JalviewJabawsTestUtils.getJabawsDiscoverer();
85		}
86
87		/**
88		* This test marked Interactive as it appears to need user action to complete
89		* rather than hang
90		*/
91
		0% Uncovered Elements: 60 (60) Complexity: 14 Complexity Density: 0.35
92	0	@Test(groups = { "Interactive" }, enabled = true)...
93		public void testJws2Gui()
94		{
95	0	Iterator<String> presetEnum = presetTests.iterator();
96	0	for (ServiceWithParameters _service : disc.getServices())
97		{
98		// This will fail for non-jabaws services
99	0	Jws2Instance service = (Jws2Instance) _service;
100	0	if (serviceTests.size() == 0
101		|| serviceTests.contains(service.getName().toLowerCase(Locale.ROOT)))
102		{
103	0	List<Preset> prl = null;
104	0	Preset pr = null;
105	0	if (presetEnum.hasNext())
106		{
107	0	PresetManager prman = service.getPresets();
108	0	if (prman != null)
109		{
110	0	pr = prman.getPresetByName(presetEnum.next());
111	0	if (pr == null)
112		{
113		// just grab the last preset.
114	0	prl = prman.getPresets();
115		}
116		}
117		}
118		else
119		{
120	0	PresetManager prman = service.getPresets();
121	0	if (prman != null)
122		{
123	0	prl = prman.getPresets();
124		}
125		}
126	0	Iterator<Preset> en = (prl == null) ? null : prl.iterator();
127	0	while (en != null && en.hasNext())
128		{
129	0	if (en != null)
130		{
131	0	if (!en.hasNext())
132		{
133	0	en = prl.iterator();
134		}
135	0	pr = en.next();
136		}
137	0	WsJobParameters pgui = new WsJobParameters((ParamDatastoreI) null,
138		service, new JabaPreset(service, pr),
139		(List<ArgumentI>) null);
140	0	JFrame jf = new JFrame(MessageManager
141		.formatMessage("label.ws_parameters_for", new String[]
142		{ service.getActionText() }));
143	0	jf.setSize(700, 800);
144	0	JPanel cont = new JPanel(new BorderLayout());
145	0	pgui.validate();
146	0	cont.setPreferredSize(pgui.getPreferredSize());
147	0	cont.add(pgui, BorderLayout.CENTER);
148	0	jf.setLayout(new BorderLayout());
149	0	jf.add(cont, BorderLayout.CENTER);
150	0	jf.validate();
151
152	0	final Thread thr = Thread.currentThread();
153
154		/*
155		* This seems to need a user to manually inspect / test / close the
156		* GUI for each service tested. Not standalone JUnit.
157		*/
158	0	jf.addWindowListener(new WindowAdapter()
159		{
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
160	0	@Override...
161		public void windowClosing(WindowEvent e)
162		{
163	0	thr.interrupt();
164		}
165		});
166	0	jf.setVisible(true);
167	0	boolean inter = false;
168	0	while (!inter)
169		{
170	0	try
171		{
172	0	Thread.sleep(10 * 1000);
173		} catch (InterruptedException e)
174		{
175	0	inter = true;
176		}
177		}
178	0	jf.dispose();
179		}
180		}
181		}
182		}
183		}