Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
Matchers	11	4	4	0.7575%	Show methods

Class Matchers

Class Matchers	Line # 11	Total Statements 4	Complexity 4	TOTAL Coverage 0.7575%
matchesSequenceString(String) : Matcher<SequenceI>   matchesSequenceString(String) : Matcher<SequenceI>	1313	1.01	1.01	1.0 1.0100%
matchesSequenceString(SequenceI) : Matcher<SequenceI>   matchesSequenceString(SequenceI) : Matcher<SequenceI>	1818	1.01	1.01	1.0 1.0100%
matchesAnnotations(List<Annotation>) : Matcher<Annotation[]>   matchesAnnotations(List<Annotation>) : Matcher<Annotation[]>	2323	1.01	1.01	0.0 0.00%
matchesAnnotations(Annotation) : Matcher<Annotation[]>   matchesAnnotations(Annotation) : Matcher<Annotation[]>	2929	1.01	1.01	1.0 1.0100%

 

Contributing tests

Contributing tests

Select all

	Test contribution	Test	Result	Actions
	0.5	jalview.ws2.actions.secstructpred.SecStructPredMsaTaskTest.testCollectResultsjalview.ws2.actions.secstructpred.SecStructPredMsaTaskTest.testCollectResults	1PASS
	0.5	jalview.ws2.actions.secstructpred.SecStructPredMsaTaskTest.testCollectResultsjalview.ws2.actions.secstructpred.SecStructPredMsaTaskTest.testCollectResults	1PASS
	0.25	jalview.ws2.actions.annotation.AnnotationJobTest.testCreate_NonStandardInColumnsAndFilterNonStandard_ColumnsExtrudedjalview.ws2.actions.annotation.AnnotationJobTest.testCreate_NonStandardInColumnsAndFilterNonStandard_ColumnsExtruded	1PASS
	0.25	jalview.datamodel.AlignmentAnnotationTests.testMakeVisibleAnnotation_NoColsHiddenjalview.datamodel.AlignmentAnnotationTests.testMakeVisibleAnnotation_NoColsHidden	1PASS
	0.25	jalview.ws2.actions.secstructpred.SecStructPredMsaTaskTest.testPrepareJobs_checkInputSequencesjalview.ws2.actions.secstructpred.SecStructPredMsaTaskTest.testPrepareJobs_checkInputSequences	1PASS
	0.25	jalview.ws2.actions.annotation.AnnotationJobTest.testCreate_UnequalLengthNoGapsSubmitGapsjalview.ws2.actions.annotation.AnnotationJobTest.testCreate_UnequalLengthNoGapsSubmitGaps	1PASS
	0.25	jalview.datamodel.AlignmentAnnotationTests.testMakeVisibleAnnotation_TruncateAndHideColumnsjalview.datamodel.AlignmentAnnotationTests.testMakeVisibleAnnotation_TruncateAndHideColumns	1PASS
	0.25	jalview.datamodel.AlignmentAnnotationTests.testMakeVisibleAnnotation_HiddenRegionBeforeStartjalview.datamodel.AlignmentAnnotationTests.testMakeVisibleAnnotation_HiddenRegionBeforeStart	1PASS
	0.25	jalview.ws2.actions.alignment.AlignmentActionTest.submitSequences_submitGapsOff_verifySequencesSubmittedWithoutGapsjalview.ws2.actions.alignment.AlignmentActionTest.submitSequences_submitGapsOff_verifySequencesSubmittedWithoutGaps	1PASS
	0.25	jalview.ws2.actions.secstructpred.SecStructPredPDBSearchTaskTest.testPrepareJobs_checkInputSequencesjalview.ws2.actions.secstructpred.SecStructPredPDBSearchTaskTest.testPrepareJobs_checkInputSequences	1PASS
	0.25	jalview.ws2.actions.alignment.AlignmentActionListenerNotifiedTest.submitSequences_submitGapsOff_verifySequencesSubmittedWithoutGapsjalview.ws2.actions.alignment.AlignmentActionListenerNotifiedTest.submitSequences_submitGapsOff_verifySequencesSubmittedWithoutGaps	1PASS
	0.25	jalview.ws2.actions.secstructpred.SecStructPredMsaTaskTest.testPrepareJobs_checkInputSequencesjalview.ws2.actions.secstructpred.SecStructPredMsaTaskTest.testPrepareJobs_checkInputSequences	1PASS
	0.25	jalview.ws2.actions.annotation.AnnotationJobTest.testCreate_ContainsNonStandardAndFilterNonStandard_NonStandardToGapjalview.ws2.actions.annotation.AnnotationJobTest.testCreate_ContainsNonStandardAndFilterNonStandard_NonStandardToGap	1PASS
	0.25	jalview.ws2.actions.secstructpred.SecStructPredPDBSearchTaskTest.testCollectResultjalview.ws2.actions.secstructpred.SecStructPredPDBSearchTaskTest.testCollectResult	1PASS
	0.25	jalview.ws2.actions.annotation.AnnotationJobTest.testCreate_EmptyColumnAndRequireAligned_ColumnExtrudedjalview.ws2.actions.annotation.AnnotationJobTest.testCreate_EmptyColumnAndRequireAligned_ColumnExtruded	1PASS
	0.25	jalview.ws2.actions.alignment.AlignmentActionTest.submitSequences_submitGapsOn_verifySequencesSubmittedWithGapsjalview.ws2.actions.alignment.AlignmentActionTest.submitSequences_submitGapsOn_verifySequencesSubmittedWithGaps	1PASS
	0.25	jalview.ws2.actions.annotation.AnnotationJobTest.testCreate_NonStandardInColumnsAndFilterNonStandard_ColumnsExtrudedjalview.ws2.actions.annotation.AnnotationJobTest.testCreate_NonStandardInColumnsAndFilterNonStandard_ColumnsExtruded	1PASS
	0.25	jalview.ws2.actions.secstructpred.SecStructPredMsaTaskTest.testPrepareJobs_checkInputSequencesjalview.ws2.actions.secstructpred.SecStructPredMsaTaskTest.testPrepareJobs_checkInputSequences	1PASS
	0.25	jalview.ws2.actions.alignment.AlignmentActionTest.retrieveResult_verifySequencesAlignedjalview.ws2.actions.alignment.AlignmentActionTest.retrieveResult_verifySequencesAligned	1PASS
	0.25	jalview.ws2.actions.annotation.AnnotationJobTest.testCreate_RegionIncludingGapsAndSubmitGaps_RegionSubmittedGapsExtrudedjalview.ws2.actions.annotation.AnnotationJobTest.testCreate_RegionIncludingGapsAndSubmitGaps_RegionSubmittedGapsExtruded	1PASS
	0.25	jalview.ws2.actions.secstructpred.SecStructPredPDBSearchTaskTest.testPrepareJobs_checkInputSequencesjalview.ws2.actions.secstructpred.SecStructPredPDBSearchTaskTest.testPrepareJobs_checkInputSequences	1PASS
	0.25	jalview.datamodel.AlignmentAnnotationTests.testMakeVisibleAnnotation_Truncatejalview.datamodel.AlignmentAnnotationTests.testMakeVisibleAnnotation_Truncate	1PASS
	0.25	jalview.datamodel.AlignmentAnnotationTests.testMakeVisibleAnnotation_ExplicitFullWidthAndHideCols2jalview.datamodel.AlignmentAnnotationTests.testMakeVisibleAnnotation_ExplicitFullWidthAndHideCols2	1PASS
	0.25	jalview.ws2.actions.secstructpred.SecStructPredMsaTaskTest.testPrepareJobs_checkInputSequencesjalview.ws2.actions.secstructpred.SecStructPredMsaTaskTest.testPrepareJobs_checkInputSequences	1PASS
	0.25	jalview.ws2.actions.annotation.AnnotationJobTest.testCreate_RegionIncludingGaps_RegionSubmittedWithoutGapsjalview.ws2.actions.annotation.AnnotationJobTest.testCreate_RegionIncludingGaps_RegionSubmittedWithoutGaps	1PASS
	0.25	jalview.ws2.actions.secstructpred.SecStructPredMsaTaskTest.testPrepareJobs_checkInputSequencesjalview.ws2.actions.secstructpred.SecStructPredMsaTaskTest.testPrepareJobs_checkInputSequences	1PASS
	0.25	jalview.datamodel.AlignmentAnnotationTests.testMakeVisibleAnnotation_ExplicitFullWidthAndHideColsjalview.datamodel.AlignmentAnnotationTests.testMakeVisibleAnnotation_ExplicitFullWidthAndHideCols	1PASS
	0.25	jalview.datamodel.AlignmentAnnotationTests.testMakeVisibleAnnotation_HiddenRegionAndTrimStartBeforeStartjalview.datamodel.AlignmentAnnotationTests.testMakeVisibleAnnotation_HiddenRegionAndTrimStartBeforeStart	1PASS
	0.25	jalview.datamodel.AlignmentAnnotationTests.testMakeVisibleAnnotation_HideColsWithEmptyAnnotsjalview.datamodel.AlignmentAnnotationTests.testMakeVisibleAnnotation_HideColsWithEmptyAnnots	1PASS
	0.25	jalview.datamodel.AlignmentAnnotationTests.testMakeVisibleAnnotation_HiddenRegionBeyondSizejalview.datamodel.AlignmentAnnotationTests.testMakeVisibleAnnotation_HiddenRegionBeyondSize	1PASS
	0.25	jalview.datamodel.AlignmentAnnotationTests.testMakeVisibleAnnotation_HiddenRegionAndTrimEndBeyondSizejalview.datamodel.AlignmentAnnotationTests.testMakeVisibleAnnotation_HiddenRegionAndTrimEndBeyondSize	1PASS
	0.25	jalview.ws2.actions.annotation.AnnotationJobTest.testCreate_NonStandardInColumnsAndFilterNonStandard_ColumnsExtrudedjalview.ws2.actions.annotation.AnnotationJobTest.testCreate_NonStandardInColumnsAndFilterNonStandard_ColumnsExtruded	1PASS
	0.25	jalview.ws2.actions.annotation.AnnotationJobTest.testCreate_EqualLengthNoGapsNoSubmitGapsjalview.ws2.actions.annotation.AnnotationJobTest.testCreate_EqualLengthNoGapsNoSubmitGaps	1PASS
	0.25	jalview.ws2.actions.secstructpred.SecStructPredPDBSearchTaskTest.testPrepareJobs_checkInputSequencesjalview.ws2.actions.secstructpred.SecStructPredPDBSearchTaskTest.testPrepareJobs_checkInputSequences	1PASS
	0.25	jalview.datamodel.AlignmentAnnotationTests.testMakeVisibleAnnotation_HideColsjalview.datamodel.AlignmentAnnotationTests.testMakeVisibleAnnotation_HideCols	1PASS
	0.25	jalview.datamodel.AlignmentAnnotationTests.testMakeVisibleAnnotation_HideColsWithNullAnnotsjalview.datamodel.AlignmentAnnotationTests.testMakeVisibleAnnotation_HideColsWithNullAnnots	1PASS
	0.25	jalview.ws2.actions.alignment.AlignmentActionListenerNotifiedTest.submitSequences_submitGapsOn_verifySequencesSubmittedWithGapsjalview.ws2.actions.alignment.AlignmentActionListenerNotifiedTest.submitSequences_submitGapsOn_verifySequencesSubmittedWithGaps	1PASS
	0.25	jalview.ws2.actions.secstructpred.SecStructPredMsaTaskTest.testPrepareJobs_checkInputSequencesjalview.ws2.actions.secstructpred.SecStructPredMsaTaskTest.testPrepareJobs_checkInputSequences	1PASS
	0.25	jalview.ws2.actions.secstructpred.SecStructPredPDBSearchTaskTest.testPrepareJobs_checkInputSequencesjalview.ws2.actions.secstructpred.SecStructPredPDBSearchTaskTest.testPrepareJobs_checkInputSequences	1PASS
	0.25	jalview.datamodel.AlignmentAnnotationTests.testMakeVisibleAnnotation_TruncateEndBeyondSizejalview.datamodel.AlignmentAnnotationTests.testMakeVisibleAnnotation_TruncateEndBeyondSize	1PASS
	0.25	jalview.ws2.actions.annotation.AnnotationJobTest.testCreate_EmptyColumnAndSubmitGaps_ColumnExtrudedjalview.ws2.actions.annotation.AnnotationJobTest.testCreate_EmptyColumnAndSubmitGaps_ColumnExtruded	1PASS
	0.25	jalview.ws2.actions.annotation.AnnotationJobTest.testCreate_EqualLengthNoGapsSubmitGapsjalview.ws2.actions.annotation.AnnotationJobTest.testCreate_EqualLengthNoGapsSubmitGaps	1PASS
	0.25	jalview.ws2.actions.secstructpred.SecStructPredMsaTaskTest.testPrepareJobs_checkInputSequencesjalview.ws2.actions.secstructpred.SecStructPredMsaTaskTest.testPrepareJobs_checkInputSequences	1PASS
	0.25	jalview.ws2.actions.annotation.AnnotationJobTest.testCreate_ContainsNonStandardAndNoFilterNonStandard_NonStandardRemainjalview.ws2.actions.annotation.AnnotationJobTest.testCreate_ContainsNonStandardAndNoFilterNonStandard_NonStandardRemain	1PASS
	0.25	jalview.ws2.actions.annotation.AnnotationJobTest.testCreate_UnequalLengthNoGapsNoSubmitGapsjalview.ws2.actions.annotation.AnnotationJobTest.testCreate_UnequalLengthNoGapsNoSubmitGaps	1PASS
	0.25	jalview.ws2.actions.alignment.AlignmentActionListenerNotifiedTest.retrieveResult_verifySequencesAlignedjalview.ws2.actions.alignment.AlignmentActionListenerNotifiedTest.retrieveResult_verifySequencesAligned	1PASS
	0.25	jalview.ws2.actions.annotation.AnnotationJobTest.testCreate_UnequalLengthNoGapsSubmitGapsRequireAlignedjalview.ws2.actions.annotation.AnnotationJobTest.testCreate_UnequalLengthNoGapsSubmitGapsRequireAligned	1PASS
	0.25	jalview.ws2.actions.annotation.AnnotationJobTest.testCreate_SequenceGroup_RegionSubmittedjalview.ws2.actions.annotation.AnnotationJobTest.testCreate_SequenceGroup_RegionSubmitted	1PASS
	0.25	jalview.ws2.actions.secstructpred.SecStructPredMsaTaskTest.testPrepareJobs_checkInputSequencesjalview.ws2.actions.secstructpred.SecStructPredMsaTaskTest.testPrepareJobs_checkInputSequences	1PASS
	0.25	jalview.datamodel.AlignmentAnnotationTests.testMakeVisibleAnnotation_TruncateNegativeStartjalview.datamodel.AlignmentAnnotationTests.testMakeVisibleAnnotation_TruncateNegativeStart	1PASS

 

Source view

1		package jalview.testutils;
2
3		import java.util.Arrays;
4		import java.util.List;
5
6		import org.hamcrest.Matcher;
7
8		import jalview.datamodel.Annotation;
9		import jalview.datamodel.SequenceI;
10
		75% Uncovered Elements: 2 (8) Complexity: 4 Complexity Density: 1
11		public class Matchers
12		{
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
13	79	public static Matcher<SequenceI> matchesSequenceString(String sequence)...
14		{
15	79	return new SequenceStringMatcher(sequence);
16		}
17
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
18	818	public static Matcher<SequenceI> matchesSequenceString(SequenceI sequence)...
19		{
20	818	return new SequenceStringMatcher(sequence.getSequenceAsString());
21		}
22
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
23	0	public static Matcher<Annotation[]> matchesAnnotations(...
24		List<Annotation> annotations)
25		{
26	0	return new AnnotationsMatcher(annotations);
27		}
28
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
29	32	public static Matcher<Annotation[]> matchesAnnotations(...
30		Annotation... annotations)
31		{
32	32	return new AnnotationsMatcher(Arrays.asList(annotations));
33		}
34		}