Project Clover database Thu Dec 4 2025 14:43:25 GMT

Package jalview.hmmer

Branches:

254

Statements:

735

Methods:

73

Classes:

8

Files:

8

LOC:

2,685

NCLOC:

1,843

Total complexity:

228

Complexity density:

0.31

Statements/Method:

10.07

Methods/Class:

9.12

Average method complexity:

3.12

Package	Files	Average Method Complexity	TOTAL Coverage
jalview.hmmer jalview.hmmer	8.0 8	3.1232877 3.12	0.0028248588 0.00282485880.3%

Class	Methods	Average Method Complexity	TOTAL Coverage
HMMAlign HMMAlign	7.0 7	3.857143 3.86	0.0 0.00%
HMMBuild HMMBuild	6.0 6	6.0 6	0.0 0.00%
HMMERParamStore HMMERParamStore	21.0 21	1.5238096 1.52	0.0 0.00%
HMMERPreset HMMERPreset	8.0 8	1.0 1	0.0 0.00%
HMMSearch HMMSearch	6.0 6	4.6666665 4.67	0.0 0.00%
JackHMMER JackHMMER	4.0 4	2.75 2.75	0.0 0.00%
Search Search	5.0 5	6.0 6	0.0 0.00%
HmmerCommand HmmerCommand	16.0 16	3.5 3.5	0.014150944 0.0141509441.4%