Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
FeatureSources	36	4	4	1.0100%	Show methods

Class FeatureSources

Class FeatureSources	Line # 36	Total Statements 4	Complexity 4	TOTAL Coverage 1.0100%
getInstance() : FeatureSources   getInstance() : FeatureSources	3939	1.01	1.01	1.0 1.0100%
FeatureSources()   FeatureSources()	4646	1.01	1.01	1.0 1.0100%
getSource(String) : FeatureSourceI   getSource(String) : FeatureSourceI	5858	1.01	1.01	1.0 1.0100%
addSource(String,FeatureSource) : void   addSource(String,FeatureSource) : void	7171	1.01	1.01	1.0 1.0100%

 

Contributing tests

Contributing tests

Select all

	Test contribution	Test	Result	Actions
	0.75	jalview.io.vcf.VCFLoaderTest.testDoLoadjalview.io.vcf.VCFLoaderTest.testDoLoad	1PASS
	0.75	jalview.datamodel.SequenceFeatureTest.testGetDetailsReportjalview.datamodel.SequenceFeatureTest.testGetDetailsReport	1PASS
	0.75	jalview.io.vcf.VCFLoaderTest.testLoadVCFContigjalview.io.vcf.VCFLoaderTest.testLoadVCFContig	1PASS
	0.75	jalview.io.vcf.VCFLoaderTest.testDoLoad_vepCsqjalview.io.vcf.VCFLoaderTest.testDoLoad_vepCsq	1PASS
	0.75	jalview.io.vcf.VCFLoaderTest.testDoLoad_reverseStrandjalview.io.vcf.VCFLoaderTest.testDoLoad_reverseStrand	1PASS
	0.5	jalview.datamodel.SequenceFeatureTest.testGetDetailsReport_virtualFeaturejalview.datamodel.SequenceFeatureTest.testGetDetailsReport_virtualFeature	1PASS

 

Source view

1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.datamodel.features;
22
23		import java.util.HashMap;
24		import java.util.Map;
25
26		import jalview.bin.ApplicationSingletonProvider;
27		import jalview.bin.ApplicationSingletonProvider.ApplicationSingletonI;
28
29		/**
30		* A singleton to hold metadata about feature attributes, keyed by a unique
31		* feature source identifier
32		*
33		* @author gmcarstairs
34		*
35		*/
		100% Uncovered Elements: 0 (8) Complexity: 4 Complexity Density: 1
36		public class FeatureSources implements ApplicationSingletonI
37		{
38
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
39	299	public static FeatureSources getInstance()...
40		{
41	299	return ApplicationSingletonProvider.getInstance(FeatureSources.class);
42		}
43
44		private Map<String, FeatureSourceI> sources;
45
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
46	1	private FeatureSources()...
47		{
48	1	sources = new HashMap<>();
49		}
50
51		/**
52		* Answers the FeatureSource with the given unique identifier, or null if not
53		* known
54		*
55		* @param sourceId
56		* @return
57		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
58	295	public FeatureSourceI getSource(String sourceId)...
59		{
60	295	return sources.get(sourceId);
61		}
62
63		/**
64		* Adds the given source under the given key. This will replace any existing
65		* source with the same id, it is the caller's responsibility to ensure keys
66		* are unique if necessary.
67		*
68		* @param sourceId
69		* @param source
70		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
71	4	public void addSource(String sourceId, FeatureSource source)...
72		{
73	4	sources.put(sourceId, source);
74		}
75		}