Project Clover database Wed Dec 3 2025 17:03:17 GMT

Project overview

Branches:

1,954

Statements:

35,665

Methods:

2,563

Classes:

304

Files:

295

Packages:

LOC:

93,856

NCLOC:

64,289

Total complexity:

3,954

Complexity density:

0.11

Statements/Method:

13.92

Methods/Class:

8.43

Classes/Package:

5.53

Average method complexity:

1.54

Project	Packages	Average Method Complexity	TOTAL Coverage
Clover database Wed Dec 3 2025 17:03:17 GMT Clover database Wed Dec 3 2025 17:03:17 GMT	55.0 55	1.5427234 1.54	0.899557 0.89955790%

Metrics from sub-packages:

Separated Aggregated

Package (aggregated)	Packages	Average Method Complexity	TOTAL Coverage
jalview.hmmer jalview.hmmer	1.0 1	1.2 1.2	0.0 0.00%
jalview.ws.jabaws jalview.ws.jabaws	1.0 1	2.8888888 2.89	0.0 0.00%
jalview.ws.jws2 jalview.ws.jws2	1.0 1	2.1666667 2.17	0.0 0.00%
jalview.ext.paradise jalview.ext.paradise	1.0 1	3.4 3.4	0.0 0.00%
jalview.ws.utils jalview.ws.utils	1.0 1	2.5 2.5	0.0 0.00%
jalview.ws.seqfetcher jalview.ws.seqfetcher	1.0 1	1.5555556 1.56	0.36363637 0.3636363736.4%
jalview.fts.service.pdb jalview.fts.service.pdb	1.0 1	1.9 1.9	0.4027778 0.402777840.3%
jalview.fts.service jalview.fts.service	1.0 1	1.9 1.9	0.4027778 0.402777840.3%
jalview.ws.sifts jalview.ws.sifts	1.0 1	1.1923077 1.19	0.43773586 0.4377358643.8%
jalview.ws jalview.ws	9.0 9	1.8538462 1.85	0.43970767 0.4397076744%
jalview.structure jalview.structure	1.0 1	2.764706 2.76	0.5202864 0.520286452%
jalview.fts jalview.fts	3.0 3	1.6142857 1.61	0.59889096 0.5988909659.9%
jalview.ext.android jalview.ext.android	1.0 1	2.5 2.5	0.625 0.62562.5%
jalview.ext.rbvi.chimera jalview.ext.rbvi.chimera	1.0 1	1.2807018 1.28	0.6312849 0.631284963.1%
jalview.ext.rbvi jalview.ext.rbvi	1.0 1	1.2807018 1.28	0.6312849 0.631284963.1%
jalview.fts.threedbeacons jalview.fts.threedbeacons	1.0 1	1.4666667 1.47	0.64285713 0.6428571364.3%
jalview.testutils jalview.testutils	1.0 1	2.1666667 2.17	0.6744186 0.674418667.4%
jalview.viewmodel.styles jalview.viewmodel.styles	1.0 1	5.1666665 5.17	0.7844828 0.784482878.4%
jalview.ext jalview.ext	8.0 8	1.3505155 1.35	0.79322547 0.7932254779.3%
jalview.ext.htsjdk jalview.ext.htsjdk	1.0 1	1.1111112 1.11	0.8220339 0.822033982.2%
jalview.fts.core jalview.fts.core	1.0 1	1.55 1.55	0.8604651 0.860465186%
jalview.structures.models jalview.structures.models	1.0 1	1.3913044 1.39	0.8678161 0.867816186.8%
jalview.structures jalview.structures	1.0 1	1.3913044 1.39	0.8678161 0.867816186.8%
jalview.ws.dbsources jalview.ws.dbsources	1.0 1	1.05 1.05	0.8686679 0.868667986.9%
jalview.math jalview.math	1.0 1	2.2051282 2.21	0.8719723 0.871972387.2%
jalview.io jalview.io	4.0 4	1.9319727 1.93	0.88476 0.8847688.5%
jalview.util jalview.util	3.0 3	1.4469026 1.45	0.8898691 0.889869189%
jalview.bin jalview.bin	2.0 2	1.9885057 1.99	0.89168763 0.8916876389.2%
jalview.renderer jalview.renderer	2.0 2	1.15625 1.16	0.894027 0.89402789.4%
jalview jalview	54.0 54	1.548795 1.55	0.89853066 0.8985306689.9%
jalview.ext.ensembl jalview.ext.ensembl	1.0 1	1.0555556 1.06	0.8993056 0.899305689.9%
jalview.ws2.client jalview.ws2.client	1.0 1	1.0789474 1.08	0.90052354 0.9005235490.1%
jalview.ws2.client.slivka jalview.ws2.client.slivka	1.0 1	1.0789474 1.08	0.90052354 0.9005235490.1%
jalview.ws.rest jalview.ws.rest	1.0 1	2.0 2	0.90909094 0.9090909490.9%
jalview.project jalview.project	1.0 1	2.9473684 2.95	0.91590494 0.9159049491.6%
jalview.io.cache jalview.io.cache	1.0 1	2.0 2	0.9230769 0.923076992.3%
jalview.gui jalview.gui	2.0 2	1.5189873 1.52	0.9231163 0.923116392.3%
jalview.bin.argparser jalview.bin.argparser	1.0 1	1.92 1.92	0.9254386 0.925438692.5%
jalview.ws2 jalview.ws2	4.0 4	1.0714285 1.07	0.95604396 0.9560439695.6%
jalview.analysis jalview.analysis	2.0 2	1.4538746 1.45	0.9574382 0.957438295.7%
jalview.datamodel jalview.datamodel	2.0 2	1.3318682 1.33	0.96095705 0.9609570596.1%
jalview.ext.jmol jalview.ext.jmol	1.0 1	1.6060606 1.61	0.96307695 0.9630769596.3%
jalview.ext.so jalview.ext.so	1.0 1	1.2 1.2	0.9655172 0.965517296.6%
jalview.commands jalview.commands	1.0 1	1.4418604 1.44	0.97301584 0.9730158497.3%
jalview.workers jalview.workers	1.0 1	1.2105263 1.21	0.9748954 0.974895497.5%
jalview.util.matcher jalview.util.matcher	1.0 1	1.3846154 1.38	0.9851852 0.985185298.5%
jalview.viewmodel jalview.viewmodel	2.0 2	1.3723404 1.37	0.9858996 0.985899698.6%
jalview.analysis.scoremodels jalview.analysis.scoremodels	1.0 1	1.4081633 1.41	0.9859944 0.985994498.6%
jalview.ws2.actions.alignment jalview.ws2.actions.alignment	1.0 1	1.0714285 1.07	0.9886364 0.988636498.9%
jalview.urls jalview.urls	1.0 1	1.5454545 1.55	0.989011 0.98901198.9%
jalview.gui.structurechooser jalview.gui.structurechooser	1.0 1	1.8 1.8	0.9892473 0.989247398.9%
jalview.schemes jalview.schemes	1.0 1	1.5135136 1.51	0.9898754 0.989875499%
mc_view mc_view	1.0 1	1.0625 1.06	0.99311924 0.9931192499.3%
jalview.renderer.seqfeatures jalview.renderer.seqfeatures	1.0 1	1.12 1.12	0.9931857 0.993185799.3%
jalview.ws2.actions jalview.ws2.actions	3.0 3	1.0652174 1.07	0.9962121 0.996212199.6%
jalview.io.gff jalview.io.gff	1.0 1	1.0416666 1.04	0.9979757 0.997975799.8%
jalview.datamodel.features jalview.datamodel.features	1.0 1	1.0434783 1.04	0.998228 0.99822899.8%
jalview.ws2.actions.annotation jalview.ws2.actions.annotation	1.0 1	1.0 1	1.0 1.0100%
jalview.controller jalview.controller	1.0 1	1.0 1	1.0 1.0100%
jalview.ws.ebi jalview.ws.ebi	1.0 1	1.1428572 1.14	1.0 1.0100%
jalview.util.imagemaker jalview.util.imagemaker	1.0 1	1.0 1	1.0 1.0100%
jalview.ext.pymol jalview.ext.pymol	1.0 1	1.0 1	1.0 1.0100%
jalview.ws2.actions.secstructpred jalview.ws2.actions.secstructpred	1.0 1	1.1428572 1.14	1.0 1.0100%
jalview.io.vcf jalview.io.vcf	1.0 1	1.375 1.38	1.0 1.0100%

Coverage Report

Project overview

Code metrics