Build #5

Build and run tests under Java 11

Build: #5 was successful

Job: Clover and Tests was successful

Stages & jobs

  1. Default Stage

Code commits

Jalview Gitlab

  • Gitlab User

    Gitlab User a3717c01ff25f6dd430c1f09e1703931eb52d3e3

    JAL-4617 update release notes for JAL-4631

    • help/markdown/releases/release-2_11_5_1.md (version a3717c01ff25f6dd430c1f09e1703931eb52d3e3)
  • Gitlab User

    Gitlab User 24af8a2c8c5057d72d0bc61b7ab9083d6dde58de

    Merge branch 'patch/JAL-4606_again_and_again' into development/Release_2_11_5_Branch

  • Gitlab User

    Gitlab User 93fb58cbe20343f44ca1822ba33a9713771dea50

    JAL-4638 patch out original normalise patch for JAL-4606

    • src/jalview/structure/StructureSelectionManager.java (version 93fb58cbe20343f44ca1822ba33a9713771dea50)
  • Gitlab User

    Gitlab User 23d77417fa19d86491740b13213c4e5f6fe8c8ca

    JAL-4606 JAL-4638 -  try to report exceptions and 'ignore' them rather than wait for them to be resolved.

    • src/jalview/structures/models/AAStructureBindingModel.java (version 23d77417fa19d86491740b13213c4e5f6fe8c8ca)
  • Gitlab User

    Gitlab User de432b741cf810c75c9c231c9b4367d7fa1c25f4

    JAL-4606 more traces to debug why timeout happens when loading multiple alphafolds

    • src/jalview/ws/dbsources/EBIAlfaFold.java (version de432b741cf810c75c9c231c9b4367d7fa1c25f4)
  • Gitlab User

    Gitlab User 4274626161176356567f10cde7a170c86140a69a

    JAL-4631 don't look for an internet connection unless we are told to !

    • utils/HelpLinksChecker.java (version 4274626161176356567f10cde7a170c86140a69a)
  • Gitlab User

    Gitlab User c54f2e7db459080486c10c0ba5d6d7e0b438a760

    JAL-4606 fix a slew of concurrency oddness, unexpected nulls and report when exceptions appear

    • src/jalview/structures/models/AAStructureBindingModel.java (version c54f2e7db459080486c10c0ba5d6d7e0b438a760)
    • src/jalview/gui/Desktop.java (version c54f2e7db459080486c10c0ba5d6d7e0b438a760)
    • src/jalview/gui/AppJmol.java (version c54f2e7db459080486c10c0ba5d6d7e0b438a760)
    • src/jalview/ext/jmol/JmolCommands.java (version c54f2e7db459080486c10c0ba5d6d7e0b438a760)
    • src/jalview/ext/jmol/JalviewJmolBinding.java (version c54f2e7db459080486c10c0ba5d6d7e0b438a760)
  • Gitlab User

    Gitlab User 2e38b63969bc263f8dbd71114f4b86df78af3363

    JAL-4626 avoid race condition when pinging the AFDB API causing multiple pings

    • src/jalview/ws/dbsources/EBIAlfaFold.java (version 2e38b63969bc263f8dbd71114f4b86df78af3363)
  • Gitlab User

    Gitlab User 70ce6a8d689fdaa7d2fda171e8785cd256d8d25e

    JAL-4606 new test case for path equivalence and normalisation of all '\' to '/'

    • test/jalview/ext/jmol/JmolCommandsTest.java (version 70ce6a8d689fdaa7d2fda171e8785cd256d8d25e)
    • src/jalview/ext/jmol/JmolCommands.java (version 70ce6a8d689fdaa7d2fda171e8785cd256d8d25e)