Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
Mapping	60	6	6	0.550%	Show methods

Class Mapping

Class Mapping	Line # 60	Total Statements 6	Complexity 6	TOTAL Coverage 0.550%
getSequence() : Sequence   getSequence() : Sequence	8282	1.01	1.01	1.0 1.0100%
setSequence(Sequence) : void   setSequence(Sequence) : void	9494	1.01	1.01	0.0 0.00%
getDseqFor() : String   getDseqFor() : String	106106	1.01	1.01	1.0 1.0100%
setDseqFor(String) : void   setDseqFor(String) : void	118118	1.01	1.01	1.0 1.0100%
getMappingType() : String   getMappingType() : String	130130	1.01	1.01	0.0 0.00%
setMappingType(String) : void   setMappingType(String) : void	143143	1.01	1.01	0.0 0.00%

 

Contributing tests

Contributing tests

Select all

	Test contribution	Test	Result	Actions
	0.5	jalview.project.Jalview2xmlTests.testStoreAndRecoverGeneLocusjalview.project.Jalview2xmlTests.testStoreAndRecoverGeneLocus	1PASS
	0.33333334	jalview.io.CrossRef2xmlTests.openCrossrefsForEnsemblTwicejalview.io.CrossRef2xmlTests.openCrossrefsForEnsemblTwice	1PASS

 

Source view

1		//
2		// This file was generated by the Eclipse Implementation of JAXB, v2.3.9
3		// See https://eclipse-ee4j.github.io/jaxb-ri
4		// Any modifications to this file will be lost upon recompilation of the source schema.
5		// Generated on: 2025.04.17 at 04:05:44 PM BST
6		//
7
8
9		package jalview.xml.binding.jalview;
10
11		import javax.xml.bind.annotation.XmlAccessType;
12		import javax.xml.bind.annotation.XmlAccessorType;
13		import javax.xml.bind.annotation.XmlAttribute;
14		import javax.xml.bind.annotation.XmlElement;
15		import javax.xml.bind.annotation.XmlRootElement;
16		import javax.xml.bind.annotation.XmlType;
17
18
19		/**
20		* Represent the jalview.datamodel.Mapping object -
21		* it also provides
22		* a way of storing sequences that are mapped 'to'
23		* without adding them
24		* to the sequence set (which will mean they are
25		* then added to the alignment too).
26		*
27		* <p>Java class for anonymous complex type</p>.
28		*
29		* <p>The following schema fragment specifies the expected content contained within this class.</p>
30		*
31		* <pre>
32		* &lt;complexType&gt;
33		* &lt;complexContent&gt;
34		* &lt;extension base="{www.vamsas.ac.uk/jalview/version2}mapListType"&gt;
35		* &lt;sequence&gt;
36		* &lt;choice minOccurs="0"&gt;
37		* &lt;element ref="{www.vamsas.ac.uk/jalview/version2}Sequence"/&gt;
38		* &lt;element name="dseqFor"&gt;
39		* &lt;simpleType&gt;
40		* &lt;restriction base="{http://www.w3.org/2001/XMLSchema}string"&gt;
41		* &lt;/restriction&gt;
42		* &lt;/simpleType&gt;
43		* &lt;/element&gt;
44		* &lt;/choice&gt;
45		* &lt;/sequence&gt;
46		* &lt;attribute name="mappingType" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
47		* &lt;/extension&gt;
48		* &lt;/complexContent&gt;
49		* &lt;/complexType&gt;
50		* </pre>
51		*
52		*
53		*/
54		@XmlAccessorType(XmlAccessType.FIELD)
55		@XmlType(name = "", propOrder = {
56		"sequence",
57		"dseqFor"
58		})
59		@XmlRootElement(name = "Mapping")
		50% Uncovered Elements: 6 (12) Complexity: 6 Complexity Density: 1
60		public class Mapping
61		extends MapListType
62		{
63
64		@XmlElement(name = "Sequence")
65		protected Sequence sequence;
66		protected String dseqFor;
67		/**
68		* Biotype of the mapping e.g. CdsToPeptide
69		*
70		*/
71		@XmlAttribute(name = "mappingType")
72		protected String mappingType;
73
74		/**
75		* Gets the value of the sequence property.
76		*
77		* @return
78		* possible object is
79		* {@link Sequence }
80		*
81		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
82	23	public Sequence getSequence() {...
83	23	return sequence;
84		}
85
86		/**
87		* Sets the value of the sequence property.
88		*
89		* @param value
90		* allowed object is
91		* {@link Sequence }
92		*
93		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
94	0	public void setSequence(Sequence value) {...
95	0	this.sequence = value;
96		}
97
98		/**
99		* Gets the value of the dseqFor property.
100		*
101		* @return
102		* possible object is
103		* {@link String }
104		*
105		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
106	69	public String getDseqFor() {...
107	69	return dseqFor;
108		}
109
110		/**
111		* Sets the value of the dseqFor property.
112		*
113		* @param value
114		* allowed object is
115		* {@link String }
116		*
117		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
118	1	public void setDseqFor(String value) {...
119	1	this.dseqFor = value;
120		}
121
122		/**
123		* Biotype of the mapping e.g. CdsToPeptide
124		*
125		* @return
126		* possible object is
127		* {@link String }
128		*
129		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
130	0	public String getMappingType() {...
131	0	return mappingType;
132		}
133
134		/**
135		* Sets the value of the mappingType property.
136		*
137		* @param value
138		* allowed object is
139		* {@link String }
140		*
141		* @see #getMappingType()
142		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
143	0	public void setMappingType(String value) {...
144	0	this.mappingType = value;
145		}
146
147		}