Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
Pdbentry	58	9	8	1.0100%	Show methods
Pdbentry.Property	193	4	4	1.0100%	Show methods

Class Pdbentry

Class Pdbentry	Line # 58	Total Statements 9	Complexity 8	TOTAL Coverage 1.0100%
getProperty() : List<Pdbentry.Property>   getProperty() : List<Pdbentry.Property>	9393	3.03	2.02	1.0 1.0100%
getId() : String   getId() : String	108108	1.01	1.01	1.0 1.0100%
setId(String) : void   setId(String) : void	120120	1.01	1.01	1.0 1.0100%
getType() : String   getType() : String	132132	1.01	1.01	1.0 1.0100%
setType(String) : void   setType(String) : void	144144	1.01	1.01	1.0 1.0100%
getFile() : String   getFile() : String	156156	1.01	1.01	1.0 1.0100%
setFile(String) : void   setFile(String) : void	168168	1.01	1.01	1.0 1.0100%

 

Class Pdbentry.Property

Class Pdbentry.Property	Line # 193	Total Statements 4	Complexity 4	TOTAL Coverage 1.0100%
getName() : String   getName() : String	208208	1.01	1.01	1.0 1.0100%
setName(String) : void   setName(String) : void	220220	1.01	1.01	1.0 1.0100%
getValue() : String   getValue() : String	232232	1.01	1.01	1.0 1.0100%
setValue(String) : void   setValue(String) : void	244244	1.01	1.01	1.0 1.0100%

 

Contributing tests

Contributing tests

Select all

	Test contribution	Test	Result	Actions
	1.0	jalview.project.Jalview2xmlTests.testStoreAndRecoverPDBEntryjalview.project.Jalview2xmlTests.testStoreAndRecoverPDBEntry	1PASS
	1.0	jalview.project.Jalview2xmlTests.testSaveAndLoadAnnotationBasedTreejalview.project.Jalview2xmlTests.testSaveAndLoadAnnotationBasedTree	1PASS
	1.0	jalview.project.Jalview2xmlTests.testStoreAndRecoverExpandedviewsjalview.project.Jalview2xmlTests.testStoreAndRecoverExpandedviews	1PASS
	1.0	jalview.project.Jalview2xmlTests.testStoreAndRecoverReferenceSeqSettingsjalview.project.Jalview2xmlTests.testStoreAndRecoverReferenceSeqSettings	1PASS
	1.0	jalview.project.Jalview2xmlTests.testSaveAndLoadAnnotationsPropertiesjalview.project.Jalview2xmlTests.testSaveAndLoadAnnotationsProperties	1PASS
	1.0	jalview.io.AnnotatedPDBFileInputTest.testJalviewProjectRelocationAnnotationjalview.io.AnnotatedPDBFileInputTest.testJalviewProjectRelocationAnnotation	1PASS
	0.42307693	jalview.project.Jalview2xmlTests.noDuplicatePdbMappingsMadejalview.project.Jalview2xmlTests.noDuplicatePdbMappingsMade	1PASS
	0.42307693	jalview.io.CrossRef2xmlTests.openCrossrefsForEnsemblTwicejalview.io.CrossRef2xmlTests.openCrossrefsForEnsemblTwice	1PASS
	0.42307693	jalview.project.Jalview2xmlTests.viewRefPdbAnnotationjalview.project.Jalview2xmlTests.viewRefPdbAnnotation	1PASS
	0.42307693	jalview.project.Jalview2xmlTests.testCopyViewSettingsjalview.project.Jalview2xmlTests.testCopyViewSettings	1PASS
	0.42307693	jalview.project.Jalview2xmlTests.gatherViewsHerejalview.project.Jalview2xmlTests.gatherViewsHere	1PASS

 

Source view

1		//
2		// This file was generated by the Eclipse Implementation of JAXB, v2.3.9
3		// See https://eclipse-ee4j.github.io/jaxb-ri
4		// Any modifications to this file will be lost upon recompilation of the source schema.
5		// Generated on: 2025.04.17 at 04:05:44 PM BST
6		//
7
8
9		package jalview.xml.binding.jalview;
10
11		import java.util.ArrayList;
12		import java.util.List;
13		import javax.xml.bind.annotation.XmlAccessType;
14		import javax.xml.bind.annotation.XmlAccessorType;
15		import javax.xml.bind.annotation.XmlAttribute;
16		import javax.xml.bind.annotation.XmlSeeAlso;
17		import javax.xml.bind.annotation.XmlType;
18
19
20		/**
21		* <p>Java class for pdbentry complex type</p>.
22		*
23		* <p>The following schema fragment specifies the expected content contained within this class.</p>
24		*
25		* <pre>
26		* &lt;complexType name="pdbentry"&gt;
27		* &lt;complexContent&gt;
28		* &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
29		* &lt;sequence maxOccurs="unbounded" minOccurs="0"&gt;
30		* &lt;element name="property" maxOccurs="unbounded" minOccurs="0"&gt;
31		* &lt;complexType&gt;
32		* &lt;complexContent&gt;
33		* &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
34		* &lt;attribute name="name" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
35		* &lt;attribute name="value" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
36		* &lt;/restriction&gt;
37		* &lt;/complexContent&gt;
38		* &lt;/complexType&gt;
39		* &lt;/element&gt;
40		* &lt;/sequence&gt;
41		* &lt;attribute name="id" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
42		* &lt;attribute name="type" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
43		* &lt;attribute name="file" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
44		* &lt;/restriction&gt;
45		* &lt;/complexContent&gt;
46		* &lt;/complexType&gt;
47		* </pre>
48		*
49		*
50		*/
51		@XmlAccessorType(XmlAccessType.FIELD)
52		@XmlType(name = "pdbentry", namespace = "www.jalview.org", propOrder = {
53		"property"
54		})
55		@XmlSeeAlso({
56		jalview.xml.binding.jalview.JalviewModel.JSeq.Pdbids.class
57		})
		100% Uncovered Elements: 0 (18) Complexity: 8 Complexity Density: 0.89
58		public class Pdbentry {
59
60		protected List<Pdbentry.Property> property;
61		@XmlAttribute(name = "id", required = true)
62		protected String id;
63		@XmlAttribute(name = "type")
64		protected String type;
65		@XmlAttribute(name = "file")
66		protected String file;
67
68		/**
69		* Gets the value of the property property.
70		*
71		* <p>This accessor method returns a reference to the live list,
72		* not a snapshot. Therefore any modification you make to the
73		* returned list will be present inside the JAXB object.
74		* This is why there is not a <CODE>set</CODE> method for the property property.</p>
75		*
76		* <p>
77		* For example, to add a new item, do as follows:
78		* </p>
79		* <pre>
80		* getProperty().add(newItem);
81		* </pre>
82		*
83		*
84		* <p>
85		* Objects of the following type(s) are allowed in the list
86		* {@link Pdbentry.Property }
87		* </p>
88		*
89		*
90		* @return
91		* The value of the property property.
92		*/
		100% Uncovered Elements: 0 (5) Complexity: 2 Complexity Density: 0.67
93	694	public List<Pdbentry.Property> getProperty() {...
94	694	if (property == null) {
95	378	property = new ArrayList<Pdbentry.Property>();
96		}
97	694	return this.property;
98		}
99
100		/**
101		* Gets the value of the id property.
102		*
103		* @return
104		* possible object is
105		* {@link String }
106		*
107		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
108	812	public String getId() {...
109	812	return id;
110		}
111
112		/**
113		* Sets the value of the id property.
114		*
115		* @param value
116		* allowed object is
117		* {@link String }
118		*
119		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
120	136	public void setId(String value) {...
121	136	this.id = value;
122		}
123
124		/**
125		* Gets the value of the type property.
126		*
127		* @return
128		* possible object is
129		* {@link String }
130		*
131		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
132	670	public String getType() {...
133	670	return type;
134		}
135
136		/**
137		* Sets the value of the type property.
138		*
139		* @param value
140		* allowed object is
141		* {@link String }
142		*
143		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
144	136	public void setType(String value) {...
145	136	this.type = value;
146		}
147
148		/**
149		* Gets the value of the file property.
150		*
151		* @return
152		* possible object is
153		* {@link String }
154		*
155		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
156	982	public String getFile() {...
157	982	return file;
158		}
159
160		/**
161		* Sets the value of the file property.
162		*
163		* @param value
164		* allowed object is
165		* {@link String }
166		*
167		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
168	94	public void setFile(String value) {...
169	94	this.file = value;
170		}
171
172
173		/**
174		* <p>Java class for anonymous complex type</p>.
175		*
176		* <p>The following schema fragment specifies the expected content contained within this class.</p>
177		*
178		* <pre>
179		* &lt;complexType&gt;
180		* &lt;complexContent&gt;
181		* &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
182		* &lt;attribute name="name" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
183		* &lt;attribute name="value" use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
184		* &lt;/restriction&gt;
185		* &lt;/complexContent&gt;
186		* &lt;/complexType&gt;
187		* </pre>
188		*
189		*
190		*/
191		@XmlAccessorType(XmlAccessType.FIELD)
192		@XmlType(name = "")
		100% Uncovered Elements: 0 (8) Complexity: 4 Complexity Density: 1
193		public static class Property {
194
195		@XmlAttribute(name = "name", required = true)
196		protected String name;
197		@XmlAttribute(name = "value", required = true)
198		protected String value;
199
200		/**
201		* Gets the value of the name property.
202		*
203		* @return
204		* possible object is
205		* {@link String }
206		*
207		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
208	514	public String getName() {...
209	514	return name;
210		}
211
212		/**
213		* Sets the value of the name property.
214		*
215		* @param value
216		* allowed object is
217		* {@link String }
218		*
219		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
220	292	public void setName(String value) {...
221	292	this.name = value;
222		}
223
224		/**
225		* Gets the value of the value property.
226		*
227		* @return
228		* possible object is
229		* {@link String }
230		*
231		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
232	514	public String getValue() {...
233	514	return value;
234		}
235
236		/**
237		* Sets the value of the value property.
238		*
239		* @param value
240		* allowed object is
241		* {@link String }
242		*
243		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
244	292	public void setValue(String value) {...
245	292	this.value = value;
246		}
247
248		}
249
250		}