Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
BioJsHTMLOutputTest	40	48	12	0.550%	Show methods

Class BioJsHTMLOutputTest

Class BioJsHTMLOutputTest	Line # 40	Total Statements 48	Complexity 12	TOTAL Coverage 0.550%
setUpJvOptionPane() : void   setUpJvOptionPane() : void	4343	2.02	1.01	1.0 1.0100%
getJalviewAlignmentAsJsonString() : void   getJalviewAlignmentAsJsonString() : void	5050	9.09	3.03	0.7777778 0.777777877.8%
expectedNullPointerException() : void   expectedNullPointerException() : void	7676	4.04	2.02	0.5 0.550%
getBioJsMSAVersions() : void   getBioJsMSAVersions() : void	9292	14.014	2.02	0.85714287 0.8571428785.7%
testBioJsUpdate() : void   testBioJsUpdate() : void	124124	12.012	1.01	0.0 0.00%
urlIsReachable(String) : boolean   urlIsReachable(String) : boolean	146146	7.07	3.03	0.0 0.00%

 

Contributing tests

Contributing tests

Select all

	Test contribution	Test	Result	Actions
	0.24074075	jalview.io.BioJsHTMLOutputTest.getBioJsMSAVersionsjalview.io.BioJsHTMLOutputTest.getBioJsMSAVersions	1PASS
	0.14814815	jalview.io.BioJsHTMLOutputTest.getJalviewAlignmentAsJsonStringjalview.io.BioJsHTMLOutputTest.getJalviewAlignmentAsJsonString	1PASS
	0.055555556	jalview.io.BioJsHTMLOutputTest.expectedNullPointerExceptionjalview.io.BioJsHTMLOutputTest.expectedNullPointerException	1PASS

 

Source view

1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.io;
22
23		import jalview.gui.JvOptionPane;
24		import jalview.json.binding.biojs.BioJSReleasePojo;
25		import jalview.json.binding.biojs.BioJSRepositoryPojo;
26
27		import java.io.File;
28		import java.io.IOException;
29		import java.net.MalformedURLException;
30		import java.net.URISyntaxException;
31		import java.net.URL;
32		import java.net.URLConnection;
33		import java.util.TreeMap;
34
35		import org.testng.Assert;
36		import org.testng.AssertJUnit;
37		import org.testng.annotations.BeforeClass;
38		import org.testng.annotations.Test;
39
		50% Uncovered Elements: 27 (54) Complexity: 12 Complexity Density: 0.25
40		public class BioJsHTMLOutputTest
41		{
42
		100% Uncovered Elements: 0 (2) Complexity: 1 Complexity Density: 0.5
43	1	@BeforeClass(alwaysRun = true)...
44		public void setUpJvOptionPane()
45		{
46	1	JvOptionPane.setInteractiveMode(false);
47	1	JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
48		}
49
		77.8% Uncovered Elements: 2 (9) Complexity: 3 Complexity Density: 0.33 1PASS
50	1	@Test(groups = { "Functional" })...
51		public void getJalviewAlignmentAsJsonString()
52		{
53	1	String bjsTemplate = null;
54	1	try
55		{
56	1	BioJsHTMLOutput.updateBioJS();
57	1	try
58		{
59		// allow the update some three seconds to complete before getting latest
60		// version of BioJS template
61	1	Thread.sleep(1000 * 3);
62		} catch (InterruptedException e)
63		{
64	0	e.printStackTrace();
65		}
66	1	bjsTemplate = HTMLOutput.readFileAsString(
67		BioJsHTMLOutput.getCurrentBJSTemplateFile());
68		// System.out.println(bjsTemplate);
69		} catch (IOException e)
70		{
71	0	e.printStackTrace();
72		}
73	1	Assert.assertNotNull(bjsTemplate);
74		}
75
		50% Uncovered Elements: 2 (4) Complexity: 2 Complexity Density: 0.5 1PASS
76	1	@Test(...
77		groups =
78		{ "Functional" },
79		expectedExceptions = NullPointerException.class)
80		public void expectedNullPointerException()
81		{
82	1	try
83		{
84	1	BioJsHTMLOutput.refreshVersionInfo(null);
85		} catch (URISyntaxException e)
86		{
87	0	AssertJUnit.fail("Expception occured while testing!");
88	0	e.printStackTrace();
89		}
90		}
91
		85.7% Uncovered Elements: 2 (14) Complexity: 2 Complexity Density: 0.14 1PASS
92	1	@Test(groups = { "Functional" })...
93		public void getBioJsMSAVersions()
94		{
95	1	TreeMap<String, File> versions = null;
96	1	try
97		{
98	1	BioJsHTMLOutput.refreshVersionInfo(
99		BioJsHTMLOutput.BJS_TEMPLATES_LOCAL_DIRECTORY);
100	1	versions = BioJsHTMLOutput.getBioJsMSAVersions();
101		} catch (URISyntaxException e)
102		{
103	0	AssertJUnit.fail("Expception occured while testing!");
104	0	e.printStackTrace();
105		}
106	1	AssertJUnit.assertNotNull("No versions found", versions);
107	1	AssertJUnit.assertTrue("One or more Templates required",
108		versions.size() > 0);
109	1	System.out
110		.println("Number of discovered versions : " + versions.size());
111	1	for (String v : versions.keySet())
112		{
113	3	System.out.println("version : " + v);
114	3	System.out.println("File : " + versions.get(v));
115		}
116
117	1	System.out.println("\nCurrent latest version : "
118		+ BioJsHTMLOutput.getCurrentBJSTemplateFile());
119	1	AssertJUnit.assertNotNull("Latest BioJsMSA version NOT found!",
120		BioJsHTMLOutput.getCurrentBJSTemplateFile());
121
122		}
123
		0% Uncovered Elements: 12 (12) Complexity: 1 Complexity Density: 0.08 1PASS
124	0	@Test(groups = { "Network" })...
125		public void testBioJsUpdate()
126		{
127	0	String url = BioJsHTMLOutput.BJS_TEMPLATE_GIT_REPO;
128	0	AssertJUnit.assertTrue("URL not reacable : " + url,
129		urlIsReachable(url));
130	0	String response = BioJsHTMLOutput.getURLContentAsString(url);
131	0	AssertJUnit.assertNotNull("Null response read from url!", response);
132	0	BioJSRepositoryPojo repository = new BioJSRepositoryPojo(response);
133	0	System.out.println(">>> description : " + repository.getDescription());
134	0	System.out.println(
135		">>> latest version : " + repository.getLatestReleaseVersion());
136	0	System.out
137		.println(">>> repo count : " + repository.getReleases().size());
138	0	for (BioJSReleasePojo release : repository.getReleases())
139		{
140	0	System.out.println("repo type : " + release.getType());
141	0	System.out.println("url : " + release.getUrl());
142	0	System.out.println("release version : " + release.getVersion());
143		}
144		}
145
		0% Uncovered Elements: 7 (7) Complexity: 3 Complexity Density: 0.43
146	0	private static boolean urlIsReachable(String urlString)...
147		{
148	0	try
149		{
150	0	final URL url = new URL(urlString);
151	0	final URLConnection conn = url.openConnection();
152	0	conn.connect();
153	0	return true;
154		} catch (MalformedURLException e)
155		{
156	0	throw new RuntimeException(e);
157		} catch (IOException e)
158		{
159	0	return false;
160		}
161		}
162		}