Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
SequenceRenderer	30	0	0	-1.0 -	Show methods

Class SequenceRenderer

Class SequenceRenderer	Line # 30	Total Statements 0	Complexity 0	TOTAL Coverage -1.0 -

 

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.api;
22
23		import jalview.datamodel.SequenceGroup;
24		import jalview.datamodel.SequenceI;
25		import jalview.renderer.seqfeatures.FeatureColourFinder;
26
27		import java.awt.Color;
28		import java.awt.Graphics;
29
		- Uncovered Elements: 0 (0) Complexity: 0 Complexity Density: -
30		public interface SequenceRenderer
31		{
32
33		Color getResidueColour(SequenceI seq, int position,
34		FeatureColourFinder finder);
35
36		/**
37		* Configure the Graphics canvas and render options for the renderer
38		*
39		* @param g
40		* - the canvas to render to
41		* @param renderGaps
42		* - when true, gap characters will be included when rendered
43		*
44		*/
45		void prepare(Graphics g, boolean renderGaps);
46
47		void drawSequence(SequenceI nextSeq, SequenceGroup[] findAllGroups,
48		int startRes, int endRes, int i);
49
50		void drawHighlightedText(SequenceI nextSeq, int i, int j, int k, int l);
51
52		void drawCursor(Graphics g, char s, int i, int j);
53
54		}