Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
ContactListProviderI	25	2	2	0.00%	Show methods

Class ContactListProviderI

Class ContactListProviderI	Line # 25	Total Statements 2	Complexity 2	TOTAL Coverage 0.00%
getMappedPositionsFor(int,int) : int[]   getMappedPositionsFor(int,int) : int[]	6060	1.01	1.01	0.0 0.00%
getColourForGroup() : Color   getColourForGroup() : Color	6565	1.01	1.01	0.0 0.00%

 

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.datamodel;
22
23		import java.awt.Color;
24
		0% Uncovered Elements: 4 (4) Complexity: 2 Complexity Density: 1
25		public interface ContactListProviderI
26		{
27
28		/**
29		*
30		* @return position index for this contact List (usually sequence position or
31		* alignment column)
32		*/
33		int getPosition();
34
35		/**
36		* dimension of list where getContactAt(column<getContactHeight()) may return
37		* a value
38		*
39		* @return
40		*/
41		int getContactHeight();
42
43		/**
44		* get a value representing contact at column for this site
45		*
46		* @param column
47		* @return Double.NaN or a contact strength for this site
48		*/
49		double getContactAt(int column);
50
51		/**
52		* Return positions in local reference corresponding to cStart and cEnd in
53		* matrix data. Positions are base 1 column indices for sequence associated
54		* matrices.
55		*
56		* @param cStart
57		* @param cEnd
58		* @return int[] { start, end (inclusive) for each contiguous segment}
59		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
60	0	default int[] getMappedPositionsFor(int cStart, int cEnd)...
61		{
62	0	return new int[] { cStart, cEnd };
63		}
64
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
65	0	default Color getColourForGroup()...
66		{
67	0	return null;
68		}
69
70		}