Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
SecondaryStructureAnnotation	25	8	4	0.00%	Show methods

Class SecondaryStructureAnnotation

Class SecondaryStructureAnnotation	Line # 25	Total Statements 8	Complexity 4	TOTAL Coverage 0.00%
SecondaryStructureAnnotation(RNA)   SecondaryStructureAnnotation(RNA)	3030	2.02	1.01	0.0 0.00%
getRNA() : RNA   getRNA() : RNA	3737	1.01	1.01	0.0 0.00%
getAnnotation(RNA) : Annotation[]   getAnnotation(RNA) : Annotation[]	4242	5.05	2.02	0.0 0.00%

 

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.datamodel;
22
23		import fr.orsay.lri.varna.models.rna.RNA;
24
		0% Uncovered Elements: 13 (13) Complexity: 4 Complexity Density: 0.5
25		public class SecondaryStructureAnnotation extends AlignmentAnnotation
26		{
27
28		private static RNA _rna = null;
29
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
30	0	public SecondaryStructureAnnotation(RNA rna)...
31		{
32	0	super("Secondary Structure", "Un truc trop cool", getAnnotation(rna));
33
34	0	_rna = rna;
35		}
36
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
37	0	public RNA getRNA()...
38		{
39	0	return _rna;
40		}
41
		0% Uncovered Elements: 7 (7) Complexity: 2 Complexity Density: 0.4
42	0	public static Annotation[] getAnnotation(RNA rna)...
43		{
44	0	Annotation[] ann = new Annotation[rna.getSize()];
45	0	for (int i = 0; i < ann.length; i++)
46		{
47	0	ann[i] = new Annotation(_rna.getStructDBN(true), "", ' ', 0f);
48	0	;
49		}
50	0	return ann;
51		}
52		}