Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
AnnotationColourScheme	43	16	16	1.0100%	Show methods

Class AnnotationColourScheme

Class AnnotationColourScheme	Line # 43	Total Statements 16	Complexity 16	TOTAL Coverage 1.0100%
getAboveThreshold() : Integer   getAboveThreshold() : Integer	7070	1.01	1.01	1.0 1.0100%
setAboveThreshold(Integer) : void   setAboveThreshold(Integer) : void	8282	1.01	1.01	1.0 1.0100%
getAnnotation() : String   getAnnotation() : String	9494	1.01	1.01	1.0 1.0100%
setAnnotation(String) : void   setAnnotation(String) : void	106106	1.01	1.01	1.0 1.0100%
getMinColour() : Integer   getMinColour() : Integer	118118	1.01	1.01	1.0 1.0100%
setMinColour(Integer) : void   setMinColour(Integer) : void	130130	1.01	1.01	1.0 1.0100%
getMaxColour() : Integer   getMaxColour() : Integer	142142	1.01	1.01	1.0 1.0100%
setMaxColour(Integer) : void   setMaxColour(Integer) : void	154154	1.01	1.01	1.0 1.0100%
getColourScheme() : String   getColourScheme() : String	166166	1.01	1.01	1.0 1.0100%
setColourScheme(String) : void   setColourScheme(String) : void	178178	1.01	1.01	1.0 1.0100%
getThreshold() : Float   getThreshold() : Float	190190	1.01	1.01	1.0 1.0100%
setThreshold(Float) : void   setThreshold(Float) : void	202202	1.01	1.01	1.0 1.0100%
isPerSequence() : Boolean   isPerSequence() : Boolean	214214	1.01	1.01	1.0 1.0100%
setPerSequence(Boolean) : void   setPerSequence(Boolean) : void	226226	1.01	1.01	1.0 1.0100%
isPredefinedColours() : Boolean   isPredefinedColours() : Boolean	238238	1.01	1.01	1.0 1.0100%
setPredefinedColours(Boolean) : void   setPredefinedColours(Boolean) : void	250250	1.01	1.01	1.0 1.0100%

 

Contributing tests

Contributing tests

Select all

	Test contribution	Test	Result	Actions
	1.0	jalview.project.Jalview2xmlTests.testColourByAnnotScoresjalview.project.Jalview2xmlTests.testColourByAnnotScores	1PASS
	0.9375	jalview.project.Jalview2xmlTests.testStoreAndRecoverAnnotationRowElementColoursjalview.project.Jalview2xmlTests.testStoreAndRecoverAnnotationRowElementColours	1PASS

 

Source view

1		//
2		// This file was generated by the Eclipse Implementation of JAXB, v2.3.9
3		// See https://eclipse-ee4j.github.io/jaxb-ri
4		// Any modifications to this file will be lost upon recompilation of the source schema.
5		// Generated on: 2025.04.17 at 04:05:44 PM BST
6		//
7
8
9		package jalview.xml.binding.jalview;
10
11		import javax.xml.bind.annotation.XmlAccessType;
12		import javax.xml.bind.annotation.XmlAccessorType;
13		import javax.xml.bind.annotation.XmlAttribute;
14		import javax.xml.bind.annotation.XmlType;
15
16
17		/**
18		* <p>Java class for AnnotationColourScheme complex type</p>.
19		*
20		* <p>The following schema fragment specifies the expected content contained within this class.</p>
21		*
22		* <pre>
23		* &lt;complexType name="AnnotationColourScheme"&gt;
24		* &lt;complexContent&gt;
25		* &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&gt;
26		* &lt;attribute name="aboveThreshold" type="{http://www.w3.org/2001/XMLSchema}int" /&gt;
27		* &lt;attribute name="annotation" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
28		* &lt;attribute name="minColour" type="{http://www.w3.org/2001/XMLSchema}int" /&gt;
29		* &lt;attribute name="maxColour" type="{http://www.w3.org/2001/XMLSchema}int" /&gt;
30		* &lt;attribute name="colourScheme" type="{http://www.w3.org/2001/XMLSchema}string" /&gt;
31		* &lt;attribute name="threshold" type="{http://www.w3.org/2001/XMLSchema}float" /&gt;
32		* &lt;attribute name="perSequence" type="{http://www.w3.org/2001/XMLSchema}boolean" /&gt;
33		* &lt;attribute name="predefinedColours" type="{http://www.w3.org/2001/XMLSchema}boolean" /&gt;
34		* &lt;/restriction&gt;
35		* &lt;/complexContent&gt;
36		* &lt;/complexType&gt;
37		* </pre>
38		*
39		*
40		*/
41		@XmlAccessorType(XmlAccessType.FIELD)
42		@XmlType(name = "AnnotationColourScheme", namespace = "www.jalview.org")
		100% Uncovered Elements: 0 (32) Complexity: 16 Complexity Density: 1
43		public class AnnotationColourScheme {
44
45		@XmlAttribute(name = "aboveThreshold")
46		protected Integer aboveThreshold;
47		@XmlAttribute(name = "annotation")
48		protected String annotation;
49		@XmlAttribute(name = "minColour")
50		protected Integer minColour;
51		@XmlAttribute(name = "maxColour")
52		protected Integer maxColour;
53		@XmlAttribute(name = "colourScheme")
54		protected String colourScheme;
55		@XmlAttribute(name = "threshold")
56		protected Float threshold;
57		@XmlAttribute(name = "perSequence")
58		protected Boolean perSequence;
59		@XmlAttribute(name = "predefinedColours")
60		protected Boolean predefinedColours;
61
62		/**
63		* Gets the value of the aboveThreshold property.
64		*
65		* @return
66		* possible object is
67		* {@link Integer }
68		*
69		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
70	6	public Integer getAboveThreshold() {...
71	6	return aboveThreshold;
72		}
73
74		/**
75		* Sets the value of the aboveThreshold property.
76		*
77		* @param value
78		* allowed object is
79		* {@link Integer }
80		*
81		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
82	3	public void setAboveThreshold(Integer value) {...
83	3	this.aboveThreshold = value;
84		}
85
86		/**
87		* Gets the value of the annotation property.
88		*
89		* @return
90		* possible object is
91		* {@link String }
92		*
93		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
94	3	public String getAnnotation() {...
95	3	return annotation;
96		}
97
98		/**
99		* Sets the value of the annotation property.
100		*
101		* @param value
102		* allowed object is
103		* {@link String }
104		*
105		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
106	3	public void setAnnotation(String value) {...
107	3	this.annotation = value;
108		}
109
110		/**
111		* Gets the value of the minColour property.
112		*
113		* @return
114		* possible object is
115		* {@link Integer }
116		*
117		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
118	3	public Integer getMinColour() {...
119	3	return minColour;
120		}
121
122		/**
123		* Sets the value of the minColour property.
124		*
125		* @param value
126		* allowed object is
127		* {@link Integer }
128		*
129		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
130	3	public void setMinColour(Integer value) {...
131	3	this.minColour = value;
132		}
133
134		/**
135		* Gets the value of the maxColour property.
136		*
137		* @return
138		* possible object is
139		* {@link Integer }
140		*
141		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
142	3	public Integer getMaxColour() {...
143	3	return maxColour;
144		}
145
146		/**
147		* Sets the value of the maxColour property.
148		*
149		* @param value
150		* allowed object is
151		* {@link Integer }
152		*
153		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
154	3	public void setMaxColour(Integer value) {...
155	3	this.maxColour = value;
156		}
157
158		/**
159		* Gets the value of the colourScheme property.
160		*
161		* @return
162		* possible object is
163		* {@link String }
164		*
165		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
166	3	public String getColourScheme() {...
167	3	return colourScheme;
168		}
169
170		/**
171		* Sets the value of the colourScheme property.
172		*
173		* @param value
174		* allowed object is
175		* {@link String }
176		*
177		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
178	3	public void setColourScheme(String value) {...
179	3	this.colourScheme = value;
180		}
181
182		/**
183		* Gets the value of the threshold property.
184		*
185		* @return
186		* possible object is
187		* {@link Float }
188		*
189		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
190	1	public Float getThreshold() {...
191	1	return threshold;
192		}
193
194		/**
195		* Sets the value of the threshold property.
196		*
197		* @param value
198		* allowed object is
199		* {@link Float }
200		*
201		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
202	3	public void setThreshold(Float value) {...
203	3	this.threshold = value;
204		}
205
206		/**
207		* Gets the value of the perSequence property.
208		*
209		* @return
210		* possible object is
211		* {@link Boolean }
212		*
213		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
214	3	public Boolean isPerSequence() {...
215	3	return perSequence;
216		}
217
218		/**
219		* Sets the value of the perSequence property.
220		*
221		* @param value
222		* allowed object is
223		* {@link Boolean }
224		*
225		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
226	3	public void setPerSequence(Boolean value) {...
227	3	this.perSequence = value;
228		}
229
230		/**
231		* Gets the value of the predefinedColours property.
232		*
233		* @return
234		* possible object is
235		* {@link Boolean }
236		*
237		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
238	3	public Boolean isPredefinedColours() {...
239	3	return predefinedColours;
240		}
241
242		/**
243		* Sets the value of the predefinedColours property.
244		*
245		* @param value
246		* allowed object is
247		* {@link Boolean }
248		*
249		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
250	3	public void setPredefinedColours(Boolean value) {...
251	3	this.predefinedColours = value;
252		}
253
254		}