Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
ChimeraXViewFrame	36	6	6	0.00%	Show methods

Class ChimeraXViewFrame

Class ChimeraXViewFrame	Line # 36	Total Statements 6	Complexity 6	TOTAL Coverage 0.00%
ChimeraXViewFrame(PDBEntry,SequenceI[],String[],AlignmentPanel)   ChimeraXViewFrame(PDBEntry,SequenceI[],String[],AlignmentPanel)	3939	1.01	1.01	0.0 0.00%
ChimeraXViewFrame(PDBEntry[],boolean,SequenceI[][],AlignmentPanel)   ChimeraXViewFrame(PDBEntry[],boolean,SequenceI[][],AlignmentPanel)	4545	1.01	1.01	0.0 0.00%
ChimeraXViewFrame(StructureViewerModel,AlignmentPanel,String,String)   ChimeraXViewFrame(StructureViewerModel,AlignmentPanel,String,String)	5959	1.01	1.01	0.0 0.00%
getViewerType() : ViewerType   getViewerType() : ViewerType	6565	1.01	1.01	0.0 0.00%
getViewerName() : String   getViewerName() : String	7171	1.01	1.01	0.0 0.00%
newBindingModel(AlignmentPanel,PDBEntry[],SequenceI[][]) : JalviewChimeraBindingModel   newBindingModel(AlignmentPanel,PDBEntry[],SequenceI[][]) : JalviewChimeraBindingModel	7777	1.01	1.01	0.0 0.00%

 

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.gui;
22
23		import jalview.datamodel.PDBEntry;
24		import jalview.datamodel.SequenceI;
25		import jalview.datamodel.StructureViewerModel;
26		import jalview.gui.StructureViewer.ViewerType;
27
28		/**
29		* A class for the gui frame through which Jalview interacts with the ChimeraX
30		* structure viewer. Mostly the same as ChimeraViewFrame with a few overrides
31		* for the differences.
32		*
33		* @author gmcarstairs
34		*
35		*/
		0% Uncovered Elements: 12 (12) Complexity: 6 Complexity Density: 1
36		public class ChimeraXViewFrame extends ChimeraViewFrame
37		{
38
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
39	0	public ChimeraXViewFrame(PDBEntry pdb, SequenceI[] seqsForPdb,...
40		String[] chains, AlignmentPanel ap)
41		{
42	0	super(pdb, seqsForPdb, chains, ap);
43		}
44
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
45	0	public ChimeraXViewFrame(PDBEntry[] pdbsForFile, boolean superposeAdded,...
46		SequenceI[][] theSeqs, AlignmentPanel ap)
47		{
48	0	super(pdbsForFile, superposeAdded, theSeqs, ap);
49		}
50
51		/**
52		* Constructor given a session file to be loaded
53		*
54		* @param viewerData
55		* @param alignPanel
56		* @param sessionFile
57		* @param vid
58		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
59	0	public ChimeraXViewFrame(StructureViewerModel viewerData,...
60		AlignmentPanel alignPanel, String sessionFile, String vid)
61		{
62	0	super(viewerData, alignPanel, sessionFile, vid);
63		}
64
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
65	0	@Override...
66		public ViewerType getViewerType()
67		{
68	0	return ViewerType.CHIMERAX;
69		}
70
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
71	0	@Override...
72		protected String getViewerName()
73		{
74	0	return "ChimeraX";
75		}
76
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
77	0	@Override...
78		protected JalviewChimeraBindingModel newBindingModel(AlignmentPanel ap,
79		PDBEntry[] pdbentrys, SequenceI[][] seqs)
80		{
81	0	return new JalviewChimeraXBindingModel(this,
82		ap.getStructureSelectionManager(), pdbentrys, seqs, null);
83		}
84		}