Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
SequenceSet	23	28	15	0.00%	Show methods

Class SequenceSet

Class SequenceSet	Line # 23	Total Statements 28	Complexity 15	TOTAL Coverage 0.00%
SequenceSet()   SequenceSet()	2727	0.00	1.01	-1.0 -1.0 -
SequenceSet(vamsas.objects.simple.Sequence[])   SequenceSet(vamsas.objects.simple.Sequence[])	3131	1.01	1.01	0.0 0.00%
getSeqs() : vamsas.objects.simple.Sequence[]   getSeqs() : vamsas.objects.simple.Sequence[]	4141	1.01	1.01	0.0 0.00%
setSeqs(vamsas.objects.simple.Sequence[]) : void   setSeqs(vamsas.objects.simple.Sequence[]) : void	5151	1.01	1.01	0.0 0.00%
equals(java.lang.Object) : boolean   equals(java.lang.Object) : boolean	5858	14.014	5.05	0.0 0.00%
hashCode() : int   hashCode() : int	8989	11.011	6.06	0.0 0.00%

 

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package vamsas.objects.simple;
22
		0% Uncovered Elements: 50 (50) Complexity: 15 Complexity Density: 0.54
23		public class SequenceSet implements java.io.Serializable
24		{
25		private vamsas.objects.simple.Sequence[] seqs;
26
		- Uncovered Elements: 0 (0) Complexity: 1 Complexity Density: -
27	0	public SequenceSet()...
28		{
29		}
30
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
31	0	public SequenceSet(vamsas.objects.simple.Sequence[] seqs)...
32		{
33	0	this.seqs = seqs;
34		}
35
36		/**
37		* Gets the seqs value for this SequenceSet.
38		*
39		* @return seqs
40		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
41	0	public vamsas.objects.simple.Sequence[] getSeqs()...
42		{
43	0	return seqs;
44		}
45
46		/**
47		* Sets the seqs value for this SequenceSet.
48		*
49		* @param seqs
50		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
51	0	public void setSeqs(vamsas.objects.simple.Sequence[] seqs)...
52		{
53	0	this.seqs = seqs;
54		}
55
56		private java.lang.Object __equalsCalc = null;
57
		0% Uncovered Elements: 22 (22) Complexity: 5 Complexity Density: 0.36
58	0	@Override...
59		public synchronized boolean equals(java.lang.Object obj)
60		{
61	0	if (obj == null)
62		{
63	0	return false;
64		}
65	0	if (!(obj instanceof SequenceSet))
66		{
67	0	return false;
68		}
69	0	SequenceSet other = (SequenceSet) obj;
70	0	if (this == obj)
71		{
72	0	return true;
73		}
74	0	if (__equalsCalc != null)
75		{
76	0	return (__equalsCalc == obj);
77		}
78	0	__equalsCalc = obj;
79	0	boolean _equals;
80	0	_equals = true && ((this.seqs == null && other.getSeqs() == null)
81		|| (this.seqs != null && java.util.Arrays.equals(this.seqs,
82		other.getSeqs())));
83	0	__equalsCalc = null;
84	0	return _equals;
85		}
86
87		private boolean __hashCodeCalc = false;
88
		0% Uncovered Elements: 19 (19) Complexity: 6 Complexity Density: 0.55
89	0	@Override...
90		public synchronized int hashCode()
91		{
92	0	if (__hashCodeCalc)
93		{
94	0	return 0;
95		}
96	0	__hashCodeCalc = true;
97	0	int _hashCode = 1;
98	0	if (getSeqs() != null)
99		{
100	0	for (int i = 0; i < java.lang.reflect.Array.getLength(getSeqs()); i++)
101		{
102	0	java.lang.Object obj = java.lang.reflect.Array.get(getSeqs(), i);
103	0	if (obj != null && !obj.getClass().isArray())
104		{
105	0	_hashCode += obj.hashCode();
106		}
107		}
108		}
109	0	__hashCodeCalc = false;
110	0	return _hashCode;
111		}
112
113		}