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package jalview.xml.binding.uniprot; |
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import java.util.ArrayList; |
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import java.util.List; |
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import javax.xml.bind.annotation.XmlAccessType; |
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import javax.xml.bind.annotation.XmlAccessorType; |
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import javax.xml.bind.annotation.XmlAttribute; |
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import javax.xml.bind.annotation.XmlElement; |
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import javax.xml.bind.annotation.XmlRootElement; |
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import javax.xml.bind.annotation.XmlSchemaType; |
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import javax.xml.bind.annotation.XmlType; |
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import javax.xml.datatype.XMLGregorianCalendar; |
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@XmlAccessorType(XmlAccessType.FIELD) |
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@XmlType( |
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name = "", |
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propOrder = |
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{ "accession", "name", "protein", "gene", "organism", "organismHost", |
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"geneLocation", "reference", "comment", "dbReference", |
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"proteinExistence", "keyword", "feature", "evidence", "sequence" }) |
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@XmlRootElement(name = "entry") |
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Uncovered Elements: 76 (98) |
Complexity: 38 |
Complexity Density: 0.78 |
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public class Entry |
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{ |
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@XmlElement(required = true) |
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protected List<String> accession; |
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@XmlElement(required = true) |
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protected List<String> name; |
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@XmlElement(required = true) |
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protected ProteinType protein; |
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protected List<GeneType> gene; |
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@XmlElement(required = true) |
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protected OrganismType organism; |
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protected List<OrganismType> organismHost; |
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protected List<GeneLocationType> geneLocation; |
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@XmlElement(required = true) |
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protected List<ReferenceType> reference; |
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@XmlElement(nillable = true) |
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protected List<CommentType> comment; |
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protected List<DbReferenceType> dbReference; |
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@XmlElement(required = true) |
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protected ProteinExistenceType proteinExistence; |
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protected List<KeywordType> keyword; |
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protected List<FeatureType> feature; |
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protected List<EvidenceType> evidence; |
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@XmlElement(required = true) |
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protected SequenceType sequence; |
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@XmlAttribute(name = "dataset", required = true) |
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protected String dataset; |
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@XmlAttribute(name = "created", required = true) |
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@XmlSchemaType(name = "date") |
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protected XMLGregorianCalendar created; |
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@XmlAttribute(name = "modified", required = true) |
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@XmlSchemaType(name = "date") |
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protected XMLGregorianCalendar modified; |
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@XmlAttribute(name = "version", required = true) |
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protected int version; |
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@link |
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| 60% |
Uncovered Elements: 2 (5) |
Complexity: 2 |
Complexity Density: 0.67 |
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public List<String> getAccession()... |
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{ |
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if (accession == null) |
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{ |
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accession = new ArrayList<String>(); |
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} |
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return this.accession; |
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} |
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@link |
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| 60% |
Uncovered Elements: 2 (5) |
Complexity: 2 |
Complexity Density: 0.67 |
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public List<String> getName()... |
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{ |
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if (name == null) |
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{ |
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name = new ArrayList<String>(); |
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} |
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return this.name; |
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} |
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@return@link |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
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public ProteinType getProtein()... |
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{ |
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return protein; |
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} |
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@param |
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@link |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
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public void setProtein(ProteinType value)... |
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{ |
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this.protein = value; |
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} |
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@link |
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| 0% |
Uncovered Elements: 5 (5) |
Complexity: 2 |
Complexity Density: 0.67 |
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public List<GeneType> getGene()... |
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{ |
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if (gene == null) |
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{ |
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gene = new ArrayList<GeneType>(); |
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} |
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return this.gene; |
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} |
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@return@link |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
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public OrganismType getOrganism()... |
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{ |
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return organism; |
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} |
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@param |
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@link |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
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public void setOrganism(OrganismType value)... |
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{ |
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this.organism = value; |
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} |
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@link |
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| 0% |
Uncovered Elements: 5 (5) |
Complexity: 2 |
Complexity Density: 0.67 |
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public List<OrganismType> getOrganismHost()... |
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{ |
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if (organismHost == null) |
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{ |
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organismHost = new ArrayList<OrganismType>(); |
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} |
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return this.organismHost; |
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} |
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@link |
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| 0% |
Uncovered Elements: 5 (5) |
Complexity: 2 |
Complexity Density: 0.67 |
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public List<GeneLocationType> getGeneLocation()... |
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{ |
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if (geneLocation == null) |
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{ |
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geneLocation = new ArrayList<GeneLocationType>(); |
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} |
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return this.geneLocation; |
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} |
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@link |
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| 0% |
Uncovered Elements: 5 (5) |
Complexity: 2 |
Complexity Density: 0.67 |
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0 |
public List<ReferenceType> getReference()... |
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{ |
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if (reference == null) |
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{ |
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reference = new ArrayList<ReferenceType>(); |
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} |
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return this.reference; |
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} |
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@link |
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| 0% |
Uncovered Elements: 5 (5) |
Complexity: 2 |
Complexity Density: 0.67 |
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public List<CommentType> getComment()... |
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{ |
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if (comment == null) |
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{ |
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comment = new ArrayList<CommentType>(); |
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} |
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return this.comment; |
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} |
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@link |
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| 60% |
Uncovered Elements: 2 (5) |
Complexity: 2 |
Complexity Density: 0.67 |
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3 |
public List<DbReferenceType> getDbReference()... |
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{ |
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3 |
if (dbReference == null) |
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{ |
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dbReference = new ArrayList<DbReferenceType>(); |
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} |
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return this.dbReference; |
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} |
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@return@link |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
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0 |
public ProteinExistenceType getProteinExistence()... |
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{ |
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return proteinExistence; |
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} |
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@param |
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@link |
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| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
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0 |
public void setProteinExistence(ProteinExistenceType value)... |
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{ |
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this.proteinExistence = value; |
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} |
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@link |
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| 0% |
Uncovered Elements: 5 (5) |
Complexity: 2 |
Complexity Density: 0.67 |
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0 |
public List<KeywordType> getKeyword()... |
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{ |
| 478 |
0 |
if (keyword == null) |
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{ |
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0 |
keyword = new ArrayList<KeywordType>(); |
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} |
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0 |
return this.keyword; |
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} |
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@link |
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| |
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| 60% |
Uncovered Elements: 2 (5) |
Complexity: 2 |
Complexity Density: 0.67 |
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5 |
public List<FeatureType> getFeature()... |
| 509 |
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{ |
| 510 |
5 |
if (feature == null) |
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{ |
| 512 |
0 |
feature = new ArrayList<FeatureType>(); |
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} |
| 514 |
5 |
return this.feature; |
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} |
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@link |
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| |
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| 0% |
Uncovered Elements: 5 (5) |
Complexity: 2 |
Complexity Density: 0.67 |
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0 |
public List<EvidenceType> getEvidence()... |
| 541 |
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{ |
| 542 |
0 |
if (evidence == null) |
| 543 |
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{ |
| 544 |
0 |
evidence = new ArrayList<EvidenceType>(); |
| 545 |
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} |
| 546 |
0 |
return this.evidence; |
| 547 |
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} |
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| 550 |
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| 551 |
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@return@link |
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| |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
| 555 |
3 |
public SequenceType getSequence()... |
| 556 |
|
{ |
| 557 |
3 |
return sequence; |
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} |
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@param |
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@link |
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|
| |
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
| 567 |
0 |
public void setSequence(SequenceType value)... |
| 568 |
|
{ |
| 569 |
0 |
this.sequence = value; |
| 570 |
|
} |
| 571 |
|
|
| 572 |
|
|
| 573 |
|
|
| 574 |
|
|
| 575 |
|
@return@link |
| 576 |
|
|
| 577 |
|
|
| |
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
| 578 |
0 |
public String getDataset()... |
| 579 |
|
{ |
| 580 |
0 |
return dataset; |
| 581 |
|
} |
| 582 |
|
|
| 583 |
|
|
| 584 |
|
|
| 585 |
|
|
| 586 |
|
@param |
| 587 |
|
@link |
| 588 |
|
|
| 589 |
|
|
| |
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
| 590 |
0 |
public void setDataset(String value)... |
| 591 |
|
{ |
| 592 |
0 |
this.dataset = value; |
| 593 |
|
} |
| 594 |
|
|
| 595 |
|
|
| 596 |
|
|
| 597 |
|
|
| 598 |
|
@return@link |
| 599 |
|
|
| 600 |
|
|
| |
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
| 601 |
0 |
public XMLGregorianCalendar getCreated()... |
| 602 |
|
{ |
| 603 |
0 |
return created; |
| 604 |
|
} |
| 605 |
|
|
| 606 |
|
|
| 607 |
|
|
| 608 |
|
|
| 609 |
|
@param |
| 610 |
|
@link |
| 611 |
|
|
| 612 |
|
|
| |
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
| 613 |
0 |
public void setCreated(XMLGregorianCalendar value)... |
| 614 |
|
{ |
| 615 |
0 |
this.created = value; |
| 616 |
|
} |
| 617 |
|
|
| 618 |
|
|
| 619 |
|
|
| 620 |
|
|
| 621 |
|
@return@link |
| 622 |
|
|
| 623 |
|
|
| |
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
| 624 |
0 |
public XMLGregorianCalendar getModified()... |
| 625 |
|
{ |
| 626 |
0 |
return modified; |
| 627 |
|
} |
| 628 |
|
|
| 629 |
|
|
| 630 |
|
|
| 631 |
|
|
| 632 |
|
@param |
| 633 |
|
@link |
| 634 |
|
|
| 635 |
|
|
| |
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
| 636 |
0 |
public void setModified(XMLGregorianCalendar value)... |
| 637 |
|
{ |
| 638 |
0 |
this.modified = value; |
| 639 |
|
} |
| 640 |
|
|
| 641 |
|
|
| 642 |
|
|
| 643 |
|
|
| 644 |
|
|
| |
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
| 645 |
2 |
public int getVersion()... |
| 646 |
|
{ |
| 647 |
2 |
return version; |
| 648 |
|
} |
| 649 |
|
|
| 650 |
|
|
| 651 |
|
|
| 652 |
|
|
| 653 |
|
|
| |
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
| 654 |
0 |
public void setVersion(int value)... |
| 655 |
|
{ |
| 656 |
0 |
this.version = value; |
| 657 |
|
} |
| 658 |
|
|
| 659 |
|
} |