Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
GSequenceLink	45	84	23	0.00%	Show methods

Class GSequenceLink

Class GSequenceLink	Line # 45	Total Statements 84	Complexity 23	TOTAL Coverage 0.00%
GSequenceLink()   GSequenceLink()	7474	3.03	2.02	0.0 0.00%
keyTyped(KeyEvent) : void   keyTyped(KeyEvent) : void	9292	1.01	1.01	0.0 0.00%
keyTyped(KeyEvent) : void   keyTyped(KeyEvent) : void	103103	1.01	1.01	0.0 0.00%
actionPerformed(ActionEvent) : void   actionPerformed(ActionEvent) : void	115115	1.01	1.01	0.0 0.00%
actionPerformed(ActionEvent) : void   actionPerformed(ActionEvent) : void	127127	1.01	1.01	0.0 0.00%
jbInit() : void   jbInit() : void	8585	59.059	3.03	0.0 0.00%
setName(String) : void   setName(String) : void	192192	1.01	1.01	0.0 0.00%
setURL(String) : void   setURL(String) : void	198198	1.01	1.01	0.0 0.00%
getName() : String   getName() : String	203203	1.01	1.01	0.0 0.00%
getURL() : String   getURL() : String	209209	1.01	1.01	0.0 0.00%
checkValid() : boolean   checkValid() : boolean	214214	5.05	3.03	0.0 0.00%
notifyDuplicate() : void   notifyDuplicate() : void	229229	1.01	1.01	0.0 0.00%
nameTB_keyTyped(KeyEvent) : void   nameTB_keyTyped(KeyEvent) : void	237237	2.02	2.02	0.0 0.00%
urlTB_keyTyped(KeyEvent) : void   urlTB_keyTyped(KeyEvent) : void	245245	0.00	1.01	-1.0 -1.0 -
insertSeq_action(ActionEvent) : void   insertSeq_action(ActionEvent) : void	255255	1.01	1.01	0.0 0.00%
insertDBAcc_action(ActionEvent) : void   insertDBAcc_action(ActionEvent) : void	260260	1.01	1.01	0.0 0.00%
insertIntoUrl(String) : void   insertIntoUrl(String) : void	265265	4.04	1.01	0.0 0.00%

 

Contributing tests

Source view

1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.jbgui;
22
23		import jalview.gui.JvOptionPane;
24		import jalview.gui.JvSwingUtils;
25		import jalview.util.MessageManager;
26		import jalview.util.UrlLink;
27
28		import java.awt.Font;
29		import java.awt.GridBagConstraints;
30		import java.awt.GridBagLayout;
31		import java.awt.Insets;
32		import java.awt.Rectangle;
33		import java.awt.event.ActionEvent;
34		import java.awt.event.ActionListener;
35		import java.awt.event.KeyAdapter;
36		import java.awt.event.KeyEvent;
37
38		import javax.swing.BorderFactory;
39		import javax.swing.JButton;
40		import javax.swing.JLabel;
41		import javax.swing.JPanel;
42		import javax.swing.JTextField;
43		import javax.swing.SwingConstants;
44
		0% Uncovered Elements: 109 (109) Complexity: 23 Complexity Density: 0.27
45		public class GSequenceLink extends JPanel
46		{
47
48		JTextField nameTB = new JTextField();
49
50		JTextField urlTB = new JTextField();
51
52		JButton insertSeq = new JButton();
53
54		JButton insertDBAcc = new JButton();
55
56		JLabel insert = new JLabel();
57
58		JLabel jLabel1 = new JLabel();
59
60		JLabel jLabel2 = new JLabel();
61
62		JLabel jLabel3 = new JLabel();
63
64		JLabel jLabel4 = new JLabel();
65
66		JLabel jLabel5 = new JLabel();
67
68		JLabel jLabel6 = new JLabel();
69
70		JPanel jPanel1 = new JPanel();
71
72		GridBagLayout gridBagLayout1 = new GridBagLayout();
73
		0% Uncovered Elements: 3 (3) Complexity: 2 Complexity Density: 0.67
74	0	public GSequenceLink()...
75		{
76	0	try
77		{
78	0	jbInit();
79		} catch (Exception ex)
80		{
81	0	ex.printStackTrace();
82		}
83		}
84
		0% Uncovered Elements: 63 (63) Complexity: 3 Complexity Density: 0.05
85	0	private void jbInit() throws Exception...
86		{
87	0	this.setLayout(gridBagLayout1);
88	0	nameTB.setFont(JvSwingUtils.getLabelFont());
89	0	nameTB.setBounds(new Rectangle(77, 10, 310, 23));
90	0	nameTB.addKeyListener(new KeyAdapter()
91		{
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
92	0	@Override...
93		public void keyTyped(KeyEvent e)
94		{
95	0	nameTB_keyTyped(e);
96		}
97		});
98	0	urlTB.setFont(JvSwingUtils.getLabelFont());
99	0	urlTB.setText("http://");
100	0	urlTB.setBounds(new Rectangle(78, 40, 309, 23));
101	0	urlTB.addKeyListener(new KeyAdapter()
102		{
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
103	0	@Override...
104		public void keyTyped(KeyEvent e)
105		{
106	0	urlTB_keyTyped(e);
107		}
108		});
109
110	0	insertSeq.setLocation(77, 75);
111	0	insertSeq.setSize(141, 24);
112	0	insertSeq.setText(MessageManager.getString("action.seq_id"));
113	0	insertSeq.addActionListener(new ActionListener()
114		{
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
115	0	@Override...
116		public void actionPerformed(ActionEvent e)
117		{
118	0	insertSeq_action(e);
119		}
120		});
121
122	0	insertDBAcc.setLocation(210, 75);
123	0	insertDBAcc.setSize(141, 24);
124	0	insertDBAcc.setText(MessageManager.getString("action.db_acc"));
125	0	insertDBAcc.addActionListener(new ActionListener()
126		{
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
127	0	@Override...
128		public void actionPerformed(ActionEvent e)
129		{
130	0	insertDBAcc_action(e);
131		}
132		});
133
134	0	insert.setText(MessageManager.getString("label.insert"));
135	0	insert.setFont(JvSwingUtils.getLabelFont());
136	0	insert.setHorizontalAlignment(SwingConstants.RIGHT);
137	0	insert.setBounds(17, 78, 58, 16);
138
139	0	jLabel1.setFont(JvSwingUtils.getLabelFont());
140	0	jLabel1.setHorizontalAlignment(SwingConstants.TRAILING);
141	0	jLabel1.setText(MessageManager.getString("label.link_name"));
142	0	jLabel1.setBounds(new Rectangle(4, 10, 71, 24));
143	0	jLabel2.setFont(JvSwingUtils.getLabelFont());
144	0	jLabel2.setHorizontalAlignment(SwingConstants.TRAILING);
145	0	jLabel2.setText(MessageManager.getString("label.url:"));
146	0	jLabel2.setBounds(new Rectangle(17, 37, 54, 27));
147	0	jLabel3.setFont(new java.awt.Font("Verdana", Font.ITALIC, 11));
148	0	jLabel3.setText(MessageManager.getString("label.use_sequence_id_1"));
149	0	jLabel3.setBounds(new Rectangle(21, 102, 351, 15));
150	0	jLabel4.setFont(new java.awt.Font("Verdana", Font.ITALIC, 11));
151	0	jLabel4.setText(MessageManager.getString("label.use_sequence_id_2"));
152	0	jLabel4.setBounds(new Rectangle(21, 118, 351, 15));
153	0	jLabel5.setFont(new java.awt.Font("Verdana", Font.ITALIC, 11));
154	0	jLabel5.setText(MessageManager.getString("label.use_sequence_id_3"));
155	0	jLabel5.setBounds(new Rectangle(21, 136, 351, 15));
156
157	0	String lastLabel = MessageManager.getString("label.use_sequence_id_4");
158	0	if (lastLabel.length() > 0)
159		{
160		// e.g. Spanish version has longer text
161	0	jLabel6.setFont(new java.awt.Font("Verdana", Font.ITALIC, 11));
162	0	jLabel6.setText(lastLabel);
163	0	jLabel6.setBounds(new Rectangle(21, 152, 351, 15));
164		}
165
166	0	jPanel1.setBorder(BorderFactory.createEtchedBorder());
167	0	jPanel1.setLayout(null);
168	0	jPanel1.add(jLabel1);
169	0	jPanel1.add(nameTB);
170	0	jPanel1.add(urlTB);
171	0	jPanel1.add(insertSeq);
172	0	jPanel1.add(insertDBAcc);
173	0	jPanel1.add(insert);
174	0	jPanel1.add(jLabel2);
175	0	jPanel1.add(jLabel3);
176	0	jPanel1.add(jLabel4);
177	0	jPanel1.add(jLabel5);
178
179	0	int height = 160;
180	0	if (lastLabel.length() > 0)
181		{
182	0	jPanel1.add(jLabel6);
183	0	height = 176;
184		}
185
186	0	this.add(jPanel1,
187		new GridBagConstraints(0, 0, 1, 1, 1.0, 1.0,
188		GridBagConstraints.CENTER, GridBagConstraints.BOTH,
189		new Insets(5, 4, 6, 5), 390, height));
190		}
191
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
192	0	@Override...
193		public void setName(String name)
194		{
195	0	nameTB.setText(name);
196		}
197
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
198	0	public void setURL(String url)...
199		{
200	0	urlTB.setText(url);
201		}
202
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
203	0	@Override...
204		public String getName()
205		{
206	0	return nameTB.getText();
207		}
208
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
209	0	public String getURL()...
210		{
211	0	return urlTB.getText();
212		}
213
		0% Uncovered Elements: 7 (7) Complexity: 3 Complexity Density: 0.6
214	0	public boolean checkValid()...
215		{
216	0	UrlLink ul = new UrlLink("foo|" + urlTB.getText().trim());
217	0	if (ul.isValid() && ul.isDynamic())
218		{
219	0	return true;
220		}
221
222	0	JvOptionPane.showInternalMessageDialog(jalview.gui.Desktop.desktop,
223		MessageManager.getString("warn.url_must_contain"),
224		MessageManager.getString("label.invalid_url"),
225		JvOptionPane.WARNING_MESSAGE);
226	0	return false;
227		}
228
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
229	0	public void notifyDuplicate()...
230		{
231	0	JvOptionPane.showInternalMessageDialog(jalview.gui.Desktop.desktop,
232		MessageManager.getString("warn.name_cannot_be_duplicate"),
233		MessageManager.getString("label.invalid_name"),
234		JvOptionPane.WARNING_MESSAGE);
235		}
236
		0% Uncovered Elements: 4 (4) Complexity: 2 Complexity Density: 1
237	0	public void nameTB_keyTyped(KeyEvent e)...
238		{
239	0	if (e.getKeyChar() == '|')
240		{
241	0	e.consume();
242		}
243		}
244
		- Uncovered Elements: 0 (0) Complexity: 1 Complexity Density: -
245	0	public void urlTB_keyTyped(KeyEvent e)...
246		{
247		// URLLink object validation takes care of incorrect regexes.
248		// if (e.getKeyChar() == '|' || e.getKeyChar() == ' ')
249		// {
250		// e.consume();
251		// }
252
253		}
254
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
255	0	public void insertSeq_action(ActionEvent e)...
256		{
257	0	insertIntoUrl(insertSeq.getText());
258		}
259
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
260	0	public void insertDBAcc_action(ActionEvent e)...
261		{
262	0	insertIntoUrl(insertDBAcc.getText());
263		}
264
		0% Uncovered Elements: 4 (4) Complexity: 1 Complexity Density: 0.25
265	0	private void insertIntoUrl(String insertion)...
266		{
267	0	int pos = urlTB.getCaretPosition();
268	0	String text = urlTB.getText();
269	0	String newText = text.substring(0, pos) + insertion
270		+ text.substring(pos);
271	0	urlTB.setText(newText);
272		}
273		}