Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
PfamFormatInputTest	32	8	3	1.0100%	Show methods

Class PfamFormatInputTest

Class PfamFormatInputTest	Line # 32	Total Statements 8	Complexity 3	TOTAL Coverage 1.0100%
setUpJvOptionPane() : void   setUpJvOptionPane() : void	3535	2.02	1.01	1.0 1.0100%
testPfamFormatNoLimits() : void   testPfamFormatNoLimits() : void	4242	3.03	1.01	1.0 1.0100%
testPfamFormatValidLimits() : void   testPfamFormatValidLimits() : void	5353	3.03	1.01	1.0 1.0100%

 

Contributing tests

Contributing tests

Select all

	Test contribution	Test	Result	Actions
	0.36363637	jalview.io.PfamFormatInputTest.testPfamFormatValidLimitsjalview.io.PfamFormatInputTest.testPfamFormatValidLimits	1PASS
	0.36363637	jalview.io.PfamFormatInputTest.testPfamFormatNoLimitsjalview.io.PfamFormatInputTest.testPfamFormatNoLimits	1PASS

 

Source view

1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.io;
22
23		import jalview.datamodel.AlignmentI;
24		import jalview.gui.JvOptionPane;
25
26		import java.io.IOException;
27
28		import org.testng.Assert;
29		import org.testng.annotations.BeforeClass;
30		import org.testng.annotations.Test;
31
		100% Uncovered Elements: 0 (11) Complexity: 3 Complexity Density: 0.38
32		public class PfamFormatInputTest
33		{
34
		100% Uncovered Elements: 0 (2) Complexity: 1 Complexity Density: 0.5
35	1	@BeforeClass(alwaysRun = true)...
36		public void setUpJvOptionPane()
37		{
38	1	JvOptionPane.setInteractiveMode(false);
39	1	JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
40		}
41
		100% Uncovered Elements: 0 (3) Complexity: 1 Complexity Density: 0.33 1PASS
42	1	@Test(groups = "Functional")...
43		public void testPfamFormatNoLimits() throws IOException
44		{
45	1	AlignmentI al = new AppletFormatAdapter().readFile(
46		"ASEQ" + '\t' + "...--FFAFAFF--", DataSourceType.PASTE,
47		FileFormat.Pfam);
48	1	Assert.assertEquals(1, al.getHeight(), "Wrong number of sequences");
49	1	Assert.assertTrue(al.hasValidSequence(),
50		"Didn't extract limits from PFAM ID");
51		}
52
		100% Uncovered Elements: 0 (3) Complexity: 1 Complexity Density: 0.33 1PASS
53	1	@Test(groups = "Functional")...
54		public void testPfamFormatValidLimits() throws IOException
55		{
56	1	AlignmentI al = new AppletFormatAdapter().readFile(
57		"ASEQ/15-25" + '\t' + "...--FFAFAFF--", DataSourceType.PASTE,
58		FileFormat.Pfam);
59	1	Assert.assertEquals(1, al.getHeight(), "Wrong number of sequences");
60	1	Assert.assertTrue(al.hasValidSequence(),
61		"Didn't extract limits from PFAM ID");
62		}
63		}