Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
JalviewExportPropertiesTests	41	18	5	0.958333395.8%	Show methods

Class JalviewExportPropertiesTests

Class JalviewExportPropertiesTests	Line # 41	Total Statements 18	Complexity 5	TOTAL Coverage 0.958333395.8%
setUpJvOptionPane() : void   setUpJvOptionPane() : void	4444	2.02	1.01	1.0 1.0100%
setUpBeforeClass() : void   setUpBeforeClass() : void	5454	1.01	1.01	1.0 1.0100%
tearDownAfterClass() : void   tearDownAfterClass() : void	6565	2.02	2.02	0.75 0.7575%
testImportExportPeriodGaps() : void   testImportExportPeriodGaps() : void	7373	13.013	1.01	1.0 1.0100%

 

Contributing tests

Contributing tests

Select all

	Test contribution	Test	Result	Actions
	0.5833333	jalview.io.JalviewExportPropertiesTests.testImportExportPeriodGapsjalview.io.JalviewExportPropertiesTests.testImportExportPeriodGaps	1PASS

 

Source view

1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.io;
22
23		import static org.testng.AssertJUnit.assertTrue;
24
25		import org.testng.annotations.AfterClass;
26		import org.testng.annotations.BeforeClass;
27		import org.testng.annotations.Test;
28
29		import jalview.datamodel.SequenceGroup;
30		import jalview.gui.AlignFrame;
31		import jalview.gui.Desktop;
32		import jalview.gui.JvOptionPane;
33
34		/**
35		* tests which verify that properties and preferences are correctly interpreted
36		* when exporting/importing data
37		*
38		* @author jprocter
39		*
40		*/
		95.8% Uncovered Elements: 1 (24) Complexity: 5 Complexity Density: 0.28
41		public class JalviewExportPropertiesTests
42		{
43
		100% Uncovered Elements: 0 (2) Complexity: 1 Complexity Density: 0.5
44	1	@BeforeClass(alwaysRun = true)...
45		public void setUpJvOptionPane()
46		{
47	1	JvOptionPane.setInteractiveMode(false);
48	1	JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
49		}
50
51		/**
52		* @throws java.lang.Exception
53		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
54	1	@BeforeClass(alwaysRun = true)...
55		public static void setUpBeforeClass() throws Exception
56		{
57	1	jalview.bin.Jalview
58		.main(new String[]
59		{ "--props", "test/jalview/io/testProps.jvprops" });
60		}
61
62		/**
63		* @throws java.lang.Exception
64		*/
		75% Uncovered Elements: 1 (4) Complexity: 2 Complexity Density: 1
65	1	@AfterClass(alwaysRun = true)...
66		public static void tearDownAfterClass() throws Exception
67		{
68	1	if (Desktop.instance != null)
69	1	Desktop.instance.closeAll_actionPerformed(null);
70
71		}
72
		100% Uncovered Elements: 0 (13) Complexity: 1 Complexity Density: 0.08 1PASS
73	1	@Test(groups = { "Functional" })...
74		public void testImportExportPeriodGaps() throws Exception
75		{
76	1	jalview.bin.Cache.setProperty("GAP_SYMBOL", ".");
77	1	assertTrue("Couldn't set gap character to '.'",
78		".".equals("" + jalview.bin.Cache.getProperty("GAP_SYMBOL")));
79	1	AlignFrame af = new jalview.io.FileLoader().LoadFileWaitTillLoaded(
80		"examples/uniref50.fa", DataSourceType.FILE);
81	1	assertTrue("Didn't read in the example file correctly.", af != null);
82	1	assertTrue("Didn't set the gap character correctly", af.getViewport()
83		.getAlignment().getSequenceAt(0).getCharAt(5) == '.');
84
85	1	SequenceGroup sg = new SequenceGroup();
86	1	sg.addSequence(af.getViewport().getAlignment().getSequenceAt(0), false);
87	1	sg.addSequence(af.getViewport().getAlignment().getSequenceAt(1), false);
88	1	sg.setStartRes(1);
89	1	sg.setEndRes(7);
90	1	af.getViewport().setSelectionGroup(sg);
91	1	String fseqs = new FormatAdapter(af.alignPanel)
92		.formatSequences(FileFormat.Fasta, af.alignPanel, true);
93	1	assertTrue("Couldn't find '.' in the exported region\n" + fseqs,
94		fseqs.indexOf(".") > -1);
95		}
96		}