Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
SequenceRendererTest	41	19	3	1.0100%	Show methods

Class SequenceRendererTest

Class SequenceRendererTest	Line # 41	Total Statements 19	Complexity 3	TOTAL Coverage 1.0100%
setUpBeforeClass() : void   setUpBeforeClass() : void	4949	1.01	1.01	1.0 1.0100%
setUp() : void   setUp() : void	5757	7.07	1.01	1.0 1.0100%
testGetResidueColour_WithGroup() : void   testGetResidueColour_WithGroup() : void	6969	11.011	1.01	1.0 1.0100%

 

Contributing tests

Contributing tests

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	Test contribution	Test	Result	Actions
	0.54545456	jalview.gui.SequenceRendererTest.testGetResidueColour_WithGroupjalview.gui.SequenceRendererTest.testGetResidueColour_WithGroup	1PASS

 

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.gui;
22
23		import static org.testng.Assert.assertEquals;
24
25		import jalview.bin.Jalview;
26		import jalview.datamodel.Alignment;
27		import jalview.datamodel.AlignmentI;
28		import jalview.datamodel.Sequence;
29		import jalview.datamodel.SequenceGroup;
30		import jalview.datamodel.SequenceI;
31		import jalview.renderer.ResidueShader;
32		import jalview.renderer.ResidueShaderI;
33		import jalview.schemes.ZappoColourScheme;
34
35		import java.awt.Color;
36
37		import org.testng.annotations.BeforeClass;
38		import org.testng.annotations.BeforeMethod;
39		import org.testng.annotations.Test;
40
		100% Uncovered Elements: 0 (22) Complexity: 3 Complexity Density: 0.16
41		public class SequenceRendererTest
42		{
43		AlignmentI al;
44
45		AlignViewport av;
46
47		SequenceI seq1;
48
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
49	1	@BeforeClass(alwaysRun = true)...
50		public static void setUpBeforeClass() throws Exception
51		{
52	1	Jalview.main(
53		new String[]
54		{ "--nonews", "--props", "test/jalview/testProps.jvprops" });
55		}
56
		100% Uncovered Elements: 0 (7) Complexity: 1 Complexity Density: 0.14
57	1	@BeforeMethod(alwaysRun = true)...
58		public void setUp()
59		{
60	1	seq1 = new Sequence("Seq1", "ABCEEEABCABC");
61	1	SequenceI seq2 = new Sequence("Seq2", "ABCABCABCABC");
62	1	SequenceI seq3 = new Sequence("Seq3", "ABCABCABCABC");
63	1	SequenceI[] seqs = new SequenceI[] { seq1, seq2, seq3 };
64	1	al = new Alignment(seqs);
65	1	al.setDataset(null);
66	1	av = new AlignViewport(al);
67		}
68
		100% Uncovered Elements: 0 (11) Complexity: 1 Complexity Density: 0.09 1PASS
69	1	@Test(groups = "Functional")...
70		public void testGetResidueColour_WithGroup()
71		{
72	1	SequenceRenderer sr = new SequenceRenderer(av);
73	1	SequenceGroup sg = new SequenceGroup();
74	1	sg.addSequence(seq1, false);
75	1	sg.setStartRes(3);
76	1	sg.setEndRes(5);
77
78	1	ResidueShaderI rs = new ResidueShader();
79	1	rs.setColourScheme(new ZappoColourScheme());
80	1	sg.setGroupColourScheme(rs);
81
82	1	av.getAlignment().addGroup(sg);
83
84		// outside group residues are white
85	1	assertEquals(Color.white, sr.getResidueColour(seq1, 1, null));
86
87		// within group use Zappo scheme - E = red
88	1	assertEquals(Color.red, sr.getResidueColour(seq1, 3, null));
89		}
90		}