Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
RnaModel	31	5	1	0.00%	Show methods

Class RnaModel

Class RnaModel	Line # 31	Total Statements 5	Complexity 1	TOTAL Coverage 0.00%
RnaModel(String,AlignmentAnnotation,SequenceI,RNA,boolean)   RnaModel(String,AlignmentAnnotation,SequenceI,RNA,boolean)	4343	5.05	1.01	0.0 0.00%

 

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.ext.varna;
22
23		import jalview.datamodel.AlignmentAnnotation;
24		import jalview.datamodel.SequenceI;
25
26		import fr.orsay.lri.varna.models.rna.RNA;
27
28		/**
29		* Data bean wrapping the data items that define one RNA view
30		*/
		0% Uncovered Elements: 6 (6) Complexity: 1 Complexity Density: 0.2
31		public class RnaModel
32		{
33		public final String title;
34
35		public final AlignmentAnnotation ann;
36
37		public final SequenceI seq;
38
39		public final boolean gapped;
40
41		public final RNA rna;
42
		0% Uncovered Elements: 5 (5) Complexity: 1 Complexity Density: 0.2
43	0	public RnaModel(String t, AlignmentAnnotation aa, SequenceI s, RNA r,...
44		boolean g)
45		{
46	0	title = t;
47	0	ann = aa;
48	0	seq = s;
49	0	rna = r;
50	0	gapped = g;
51		}
52		}