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Coverage Report

  1. Project Clover database Wed Nov 12 2025 13:01:44 GMT
  2. Package jalview.xml.binding.jalview

File ObjectFactory.java

 

Coverage histogram

../../../../img/srcFileCovDistChart1.png
57% of files have more coverage

Code metrics

0
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61
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540
196
61
1.02
0.98
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Classes

Class Line # Actions
ObjectFactory 32 60 61
0.057851245.8%
 

Contributing tests

This file is covered by 27 tests. .

Source view

1    //
2    // This file was generated by the Eclipse Implementation of JAXB, v2.3.9
3    // See https://eclipse-ee4j.github.io/jaxb-ri
4    // Any modifications to this file will be lost upon recompilation of the source schema.
5    // Generated on: 2025.04.17 at 04:05:44 PM BST
6    //
7   
8   
9    package jalview.xml.binding.jalview;
10   
11    import javax.xml.bind.JAXBElement;
12    import javax.xml.bind.annotation.XmlElementDecl;
13    import javax.xml.bind.annotation.XmlRegistry;
14    import javax.xml.namespace.QName;
15   
16   
17    /**
18    * This object contains factory methods for each
19    * Java content interface and Java element interface
20    * generated in the jalview.xml.binding.jalview package.
21    * <p>An ObjectFactory allows you to programatically
22    * construct new instances of the Java representation
23    * for XML content. The Java representation of XML
24    * content can consist of schema derived interfaces
25    * and classes representing the binding of schema
26    * type definitions, element declarations and model
27    * groups. Factory methods for each of these are
28    * provided in this class.
29    *
30    */
31    @XmlRegistry
 
32    public class ObjectFactory {
33   
34    private static final QName _JalviewModel_QNAME = new QName("www.jalview.org", "JalviewModel");
35    private static final QName _JalviewUserColours_QNAME = new QName("www.jalview.org/colours", "JalviewUserColours");
36    private static final QName _WebServiceParameterSet_QNAME = new QName("www.jalview.org/xml/wsparamset", "WebServiceParameterSet");
37   
38    /**
39    * Create a new ObjectFactory that can be used to create new instances of schema derived classes for package: jalview.xml.binding.jalview
40    *
41    */
 
42  141 toggle public ObjectFactory() {
43    }
44   
45    /**
46    * Create an instance of {@link MapListType }
47    *
48    */
 
49  0 toggle public MapListType createMapListType() {
50  0 return new MapListType();
51    }
52   
53    /**
54    * Create an instance of {@link Sequence }
55    *
56    */
 
57  0 toggle public Sequence createSequence() {
58  0 return new Sequence();
59    }
60   
61    /**
62    * Create an instance of {@link AlcodonFrame }
63    *
64    */
 
65  0 toggle public AlcodonFrame createAlcodonFrame() {
66  0 return new AlcodonFrame();
67    }
68   
69    /**
70    * Create an instance of {@link Annotation }
71    *
72    */
 
73  0 toggle public Annotation createAnnotation() {
74  0 return new Annotation();
75    }
76   
77    /**
78    * Create an instance of {@link SequenceSet }
79    *
80    */
 
81  0 toggle public SequenceSet createSequenceSet() {
82  0 return new SequenceSet();
83    }
84   
85    /**
86    * Create an instance of {@link FeatureMatcherSet }
87    *
88    */
 
89  0 toggle public FeatureMatcherSet createFeatureMatcherSet() {
90  0 return new FeatureMatcherSet();
91    }
92   
93    /**
94    * Create an instance of {@link JalviewUserColours }
95    *
96    */
 
97  0 toggle public JalviewUserColours createJalviewUserColours() {
98  0 return new JalviewUserColours();
99    }
100   
101    /**
102    * Create an instance of {@link Pdbentry }
103    *
104    */
 
105  0 toggle public Pdbentry createPdbentry() {
106  0 return new Pdbentry();
107    }
108   
109    /**
110    * Create an instance of {@link Feature }
111    *
112    */
 
113  0 toggle public Feature createFeature() {
114  0 return new Feature();
115    }
116   
117    /**
118    * Create an instance of {@link JalviewModel }
119    *
120    */
 
121  77 toggle public JalviewModel createJalviewModel() {
122  77 return new JalviewModel();
123    }
124   
125    /**
126    * Create an instance of {@link JalviewModel.FeatureSettings }
127    *
128    */
 
129  0 toggle public JalviewModel.FeatureSettings createJalviewModelFeatureSettings() {
130  0 return new JalviewModel.FeatureSettings();
131    }
132   
133    /**
134    * Create an instance of {@link JalviewModel.PcaViewer }
135    *
136    */
 
137  0 toggle public JalviewModel.PcaViewer createJalviewModelPcaViewer() {
138  0 return new JalviewModel.PcaViewer();
139    }
140   
141    /**
142    * Create an instance of {@link JalviewModel.Tree }
143    *
144    */
 
145  0 toggle public JalviewModel.Tree createJalviewModelTree() {
146  0 return new JalviewModel.Tree();
147    }
148   
149    /**
150    * Create an instance of {@link JalviewModel.Tree.TreeColorMap }
151    *
152    */
 
153  0 toggle public JalviewModel.Tree.TreeColorMap createJalviewModelTreeTreeColorMap() {
154  0 return new JalviewModel.Tree.TreeColorMap();
155    }
156   
157    /**
158    * Create an instance of {@link JalviewModel.Viewport }
159    *
160    */
 
161  0 toggle public JalviewModel.Viewport createJalviewModelViewport() {
162  0 return new JalviewModel.Viewport();
163    }
164   
165    /**
166    * Create an instance of {@link JalviewModel.JSeq }
167    *
168    */
 
169  0 toggle public JalviewModel.JSeq createJalviewModelJSeq() {
170  0 return new JalviewModel.JSeq();
171    }
172   
173    /**
174    * Create an instance of {@link JalviewModel.JSeq.RnaViewer }
175    *
176    */
 
177  0 toggle public JalviewModel.JSeq.RnaViewer createJalviewModelJSeqRnaViewer() {
178  0 return new JalviewModel.JSeq.RnaViewer();
179    }
180   
181    /**
182    * Create an instance of {@link JalviewModel.JSeq.Pdbids }
183    *
184    */
 
185  0 toggle public JalviewModel.JSeq.Pdbids createJalviewModelJSeqPdbids() {
186  0 return new JalviewModel.JSeq.Pdbids();
187    }
188   
189    /**
190    * Create an instance of {@link AnnotationColourScheme }
191    *
192    */
 
193  0 toggle public AnnotationColourScheme createAnnotationColourScheme() {
194  0 return new AnnotationColourScheme();
195    }
196   
197    /**
198    * Create an instance of {@link PcaDataType }
199    *
200    */
 
201  0 toggle public PcaDataType createPcaDataType() {
202  0 return new PcaDataType();
203    }
204   
205    /**
206    * Create an instance of {@link DoubleVector }
207    *
208    */
 
209  0 toggle public DoubleVector createDoubleVector() {
210  0 return new DoubleVector();
211    }
212   
213    /**
214    * Create an instance of {@link DoubleMatrix }
215    *
216    */
 
217  0 toggle public DoubleMatrix createDoubleMatrix() {
218  0 return new DoubleMatrix();
219    }
220   
221    /**
222    * Create an instance of {@link Mapping }
223    *
224    */
 
225  0 toggle public Mapping createMapping() {
226  0 return new Mapping();
227    }
228   
229    /**
230    * Create an instance of {@link MapListType.MapListFrom }
231    *
232    */
 
233  0 toggle public MapListType.MapListFrom createMapListTypeMapListFrom() {
234  0 return new MapListType.MapListFrom();
235    }
236   
237    /**
238    * Create an instance of {@link MapListType.MapListTo }
239    *
240    */
 
241  0 toggle public MapListType.MapListTo createMapListTypeMapListTo() {
242  0 return new MapListType.MapListTo();
243    }
244   
245    /**
246    * Create an instance of {@link SequenceType }
247    *
248    */
 
249  0 toggle public SequenceType createSequenceType() {
250  0 return new SequenceType();
251    }
252   
253    /**
254    * Create an instance of {@link Sequence.DBRef }
255    *
256    */
 
257  0 toggle public Sequence.DBRef createSequenceDBRef() {
258  0 return new Sequence.DBRef();
259    }
260   
261    /**
262    * Create an instance of {@link AlcodonFrame.Alcodon }
263    *
264    */
 
265  0 toggle public AlcodonFrame.Alcodon createAlcodonFrameAlcodon() {
266  0 return new AlcodonFrame.Alcodon();
267    }
268   
269    /**
270    * Create an instance of {@link AlcodonFrame.AlcodMap }
271    *
272    */
 
273  0 toggle public AlcodonFrame.AlcodMap createAlcodonFrameAlcodMap() {
274  0 return new AlcodonFrame.AlcodMap();
275    }
276   
277    /**
278    * Create an instance of {@link AnnotationElement }
279    *
280    */
 
281  0 toggle public AnnotationElement createAnnotationElement() {
282  0 return new AnnotationElement();
283    }
284   
285    /**
286    * Create an instance of {@link Annotation.ThresholdLine }
287    *
288    */
 
289  0 toggle public Annotation.ThresholdLine createAnnotationThresholdLine() {
290  0 return new Annotation.ThresholdLine();
291    }
292   
293    /**
294    * Create an instance of {@link MapOnAMatrixType }
295    *
296    */
 
297  0 toggle public MapOnAMatrixType createMapOnAMatrixType() {
298  0 return new MapOnAMatrixType();
299    }
300   
301    /**
302    * Create an instance of {@link jalview.xml.binding.jalview.Property }
303    *
304    */
 
305  0 toggle public jalview.xml.binding.jalview.Property createProperty() {
306  0 return new jalview.xml.binding.jalview.Property();
307    }
308   
309    /**
310    * Create an instance of {@link SequenceSet.SequenceSetProperties }
311    *
312    */
 
313  0 toggle public SequenceSet.SequenceSetProperties createSequenceSetSequenceSetProperties() {
314  0 return new SequenceSet.SequenceSetProperties();
315    }
316   
317    /**
318    * Create an instance of {@link MatrixType }
319    *
320    */
 
321  0 toggle public MatrixType createMatrixType() {
322  0 return new MatrixType();
323    }
324   
325    /**
326    * Create an instance of {@link VAMSAS }
327    *
328    */
 
329  0 toggle public VAMSAS createVAMSAS() {
330  0 return new VAMSAS();
331    }
332   
333    /**
334    * Create an instance of {@link FeatureMatcher }
335    *
336    */
 
337  0 toggle public FeatureMatcher createFeatureMatcher() {
338  0 return new FeatureMatcher();
339    }
340   
341    /**
342    * Create an instance of {@link WebServiceParameterSet }
343    *
344    */
 
345  0 toggle public WebServiceParameterSet createWebServiceParameterSet() {
346  0 return new WebServiceParameterSet();
347    }
348   
349    /**
350    * Create an instance of {@link FeatureMatcherSet.CompoundMatcher }
351    *
352    */
 
353  0 toggle public FeatureMatcherSet.CompoundMatcher createFeatureMatcherSetCompoundMatcher() {
354  0 return new FeatureMatcherSet.CompoundMatcher();
355    }
356   
357    /**
358    * Create an instance of {@link JalviewUserColours.Colour }
359    *
360    */
 
361  0 toggle public JalviewUserColours.Colour createJalviewUserColoursColour() {
362  0 return new JalviewUserColours.Colour();
363    }
364   
365    /**
366    * Create an instance of {@link JalviewUserColours.Filter }
367    *
368    */
 
369  0 toggle public JalviewUserColours.Filter createJalviewUserColoursFilter() {
370  0 return new JalviewUserColours.Filter();
371    }
372   
373    /**
374    * Create an instance of {@link Pdbentry.Property }
375    *
376    */
 
377  0 toggle public Pdbentry.Property createPdbentryProperty() {
378  0 return new Pdbentry.Property();
379    }
380   
381    /**
382    * Create an instance of {@link Feature.OtherData }
383    *
384    */
 
385  0 toggle public Feature.OtherData createFeatureOtherData() {
386  0 return new Feature.OtherData();
387    }
388   
389    /**
390    * Create an instance of {@link JalviewModel.JGroup }
391    *
392    */
 
393  0 toggle public JalviewModel.JGroup createJalviewModelJGroup() {
394  0 return new JalviewModel.JGroup();
395    }
396   
397    /**
398    * Create an instance of {@link JalviewModel.UserColours }
399    *
400    */
 
401  0 toggle public JalviewModel.UserColours createJalviewModelUserColours() {
402  0 return new JalviewModel.UserColours();
403    }
404   
405    /**
406    * Create an instance of {@link JalviewModel.FeatureSettings.Setting }
407    *
408    */
 
409  0 toggle public JalviewModel.FeatureSettings.Setting createJalviewModelFeatureSettingsSetting() {
410  0 return new JalviewModel.FeatureSettings.Setting();
411    }
412   
413    /**
414    * Create an instance of {@link JalviewModel.FeatureSettings.Group }
415    *
416    */
 
417  0 toggle public JalviewModel.FeatureSettings.Group createJalviewModelFeatureSettingsGroup() {
418  0 return new JalviewModel.FeatureSettings.Group();
419    }
420   
421    /**
422    * Create an instance of {@link JalviewModel.PcaViewer.SequencePoint }
423    *
424    */
 
425  0 toggle public JalviewModel.PcaViewer.SequencePoint createJalviewModelPcaViewerSequencePoint() {
426  0 return new JalviewModel.PcaViewer.SequencePoint();
427    }
428   
429    /**
430    * Create an instance of {@link JalviewModel.PcaViewer.Axis }
431    *
432    */
 
433  0 toggle public JalviewModel.PcaViewer.Axis createJalviewModelPcaViewerAxis() {
434  0 return new JalviewModel.PcaViewer.Axis();
435    }
436   
437    /**
438    * Create an instance of {@link JalviewModel.PcaViewer.SeqPointMin }
439    *
440    */
 
441  0 toggle public JalviewModel.PcaViewer.SeqPointMin createJalviewModelPcaViewerSeqPointMin() {
442  0 return new JalviewModel.PcaViewer.SeqPointMin();
443    }
444   
445    /**
446    * Create an instance of {@link JalviewModel.PcaViewer.SeqPointMax }
447    *
448    */
 
449  0 toggle public JalviewModel.PcaViewer.SeqPointMax createJalviewModelPcaViewerSeqPointMax() {
450  0 return new JalviewModel.PcaViewer.SeqPointMax();
451    }
452   
453    /**
454    * Create an instance of {@link JalviewModel.Tree.TreeColorMap.ColorEntry }
455    *
456    */
 
457  0 toggle public JalviewModel.Tree.TreeColorMap.ColorEntry createJalviewModelTreeTreeColorMapColorEntry() {
458  0 return new JalviewModel.Tree.TreeColorMap.ColorEntry();
459    }
460   
461    /**
462    * Create an instance of {@link JalviewModel.Viewport.HiddenColumns }
463    *
464    */
 
465  0 toggle public JalviewModel.Viewport.HiddenColumns createJalviewModelViewportHiddenColumns() {
466  0 return new JalviewModel.Viewport.HiddenColumns();
467    }
468   
469    /**
470    * Create an instance of {@link JalviewModel.Viewport.CalcIdParam }
471    *
472    */
 
473  0 toggle public JalviewModel.Viewport.CalcIdParam createJalviewModelViewportCalcIdParam() {
474  0 return new JalviewModel.Viewport.CalcIdParam();
475    }
476   
477    /**
478    * Create an instance of {@link JalviewModel.Viewport.Overview }
479    *
480    */
 
481  0 toggle public JalviewModel.Viewport.Overview createJalviewModelViewportOverview() {
482  0 return new JalviewModel.Viewport.Overview();
483    }
484   
485    /**
486    * Create an instance of {@link JalviewModel.JSeq.RnaViewer.SecondaryStructure }
487    *
488    */
 
489  0 toggle public JalviewModel.JSeq.RnaViewer.SecondaryStructure createJalviewModelJSeqRnaViewerSecondaryStructure() {
490  0 return new JalviewModel.JSeq.RnaViewer.SecondaryStructure();
491    }
492   
493    /**
494    * Create an instance of {@link JalviewModel.JSeq.Pdbids.StructureState }
495    *
496    */
 
497  0 toggle public JalviewModel.JSeq.Pdbids.StructureState createJalviewModelJSeqPdbidsStructureState() {
498  0 return new JalviewModel.JSeq.Pdbids.StructureState();
499    }
500   
501    /**
502    * Create an instance of {@link JAXBElement }{@code <}{@link JalviewModel }{@code >}
503    *
504    * @param value
505    * Java instance representing xml element's value.
506    * @return
507    * the new instance of {@link JAXBElement }{@code <}{@link JalviewModel }{@code >}
508    */
 
509  63 toggle @XmlElementDecl(namespace = "www.jalview.org", name = "JalviewModel")
510    public JAXBElement<JalviewModel> createJalviewModel(JalviewModel value) {
511  63 return new JAXBElement<JalviewModel>(_JalviewModel_QNAME, JalviewModel.class, null, value);
512    }
513   
514    /**
515    * Create an instance of {@link JAXBElement }{@code <}{@link JalviewUserColours }{@code >}
516    *
517    * @param value
518    * Java instance representing xml element's value.
519    * @return
520    * the new instance of {@link JAXBElement }{@code <}{@link JalviewUserColours }{@code >}
521    */
 
522  1 toggle @XmlElementDecl(namespace = "www.jalview.org/colours", name = "JalviewUserColours")
523    public JAXBElement<JalviewUserColours> createJalviewUserColours(JalviewUserColours value) {
524  1 return new JAXBElement<JalviewUserColours>(_JalviewUserColours_QNAME, JalviewUserColours.class, null, value);
525    }
526   
527    /**
528    * Create an instance of {@link JAXBElement }{@code <}{@link WebServiceParameterSet }{@code >}
529    *
530    * @param value
531    * Java instance representing xml element's value.
532    * @return
533    * the new instance of {@link JAXBElement }{@code <}{@link WebServiceParameterSet }{@code >}
534    */
 
535  0 toggle @XmlElementDecl(namespace = "www.jalview.org/xml/wsparamset", name = "WebServiceParameterSet")
536    public JAXBElement<WebServiceParameterSet> createWebServiceParameterSet(WebServiceParameterSet value) {
537  0 return new JAXBElement<WebServiceParameterSet>(_WebServiceParameterSet_QNAME, WebServiceParameterSet.class, null, value);
538    }
539   
540    }
  • Report generated by OpenClover v 4.4.1 on Wed Nov 12 2025 13:12:42 GMT using coverage data from Wed Nov 12 2025 13:12:28 GMT.
  • OpenClover is free and open-source software.