| Class | Line # | Actions | |||
|---|---|---|---|---|---|
| AlignAnalysisUIText | 23 | 25 | 16 | 0.512195151.2% |
|
Class AlignAnalysisUIText |
Line # 23 |
25 |
16 |
0.512195151.2% |
|---|---|---|---|---|
| getServiceType() : String getServiceType() : String | 2828 | 1.01 | 1.01 | 0.0 0.00% |
| getCalcId() : String getCalcId() : String | 3737 | 1.01 | 1.01 | 0.0 0.00% |
| isNa() : boolean isNa() : boolean | 4747 | 1.01 | 1.01 | 0.0 0.00% |
| isPr() : boolean isPr() : boolean | 5252 | 1.01 | 1.01 | 0.0 0.00% |
| isAA() : boolean isAA() : boolean | 5757 | 1.01 | 1.01 | 0.0 0.00% |
| AlignAnalysisUIText(String,Class<?>,String,boolean,boolean,boolean,String,String,String,String) AlignAnalysisUIText(String,Class<?>,String,boolean,boolean,boolean,String,String,String,String) | 6666 | 10.010 | 1.01 | 1.0 1.0100% |
| getClient() : Class getClient() : Class | 8383 | 1.01 | 1.01 | 1.0 1.0100% |
| setClient(Class) : void setClient(Class) : void | 8888 | 1.01 | 1.01 | 0.0 0.00% |
| getAAconToggle() : String getAAconToggle() : String | 9393 | 1.01 | 1.01 | 1.0 1.0100% |
| setAAconToggle(String) : void setAAconToggle(String) : void | 9898 | 1.01 | 1.01 | 0.0 0.00% |
| getAAconToggleTooltip() : String getAAconToggleTooltip() : String | 103103 | 1.01 | 1.01 | 1.0 1.0100% |
| setAAconToggleTooltip(String) : void setAAconToggleTooltip(String) : void | 108108 | 1.01 | 1.01 | 0.0 0.00% |
| getAAeditSettings() : String getAAeditSettings() : String | 113113 | 1.01 | 1.01 | 1.0 1.0100% |
| setAAeditSettings(String) : void setAAeditSettings(String) : void | 118118 | 1.01 | 1.01 | 0.0 0.00% |
| getAAeditSettingsTooltip() : String getAAeditSettingsTooltip() : String | 123123 | 1.01 | 1.01 | 1.0 1.0100% |
| setAAeditSettingsTooltip(String) : void setAAeditSettingsTooltip(String) : void | 128128 | 1.01 | 1.01 | 0.0 0.00% |
|
0.2682927
|
jalview.gui.AnnotationLabelsTest2.testIdWidthChangesjalview.gui.AnnotationLabelsTest2.testIdWidthChanges | 1PASS | ||
|
0.2682927
|
jalview.bin.CommandsTest.commandsOpenTestjalview.bin.CommandsTest.commandsOpenTest | 1PASS | ||
|
0.2682927
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
|
0.24390244
|
jalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTestjalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTest | 1PASS | ||
|
0.24390244
|
jalview.gui.AnnotationColumnChooserTest.testResetjalview.gui.AnnotationColumnChooserTest.testReset | 1PASS | ||
|
0.24390244
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverOverviewjalview.project.Jalview2xmlTests.testStoreAndRecoverOverview | 1PASS | ||
|
0.24390244
|
jalview.io.StockholmFileTest.fullWUSSsecondaryStructureForRNASequencejalview.io.StockholmFileTest.fullWUSSsecondaryStructureForRNASequence | 1PASS | ||
|
0.24390244
|
jalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTestjalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTest | 1PASS | ||
|
0.24390244
|
jalview.io.SequenceAnnotationReportTest.testAppendFeature_DescEqualsTypejalview.io.SequenceAnnotationReportTest.testAppendFeature_DescEqualsType | 1PASS | ||
|
0.24390244
|
jalview.analysis.scoremodels.SecondaryStructureDistanceModelTest.testFindDistances_withSSUndefinedInBothSeqsjalview.analysis.scoremodels.SecondaryStructureDistanceModelTest.testFindDistances_withSSUndefinedInBothSeqs | 1PASS | ||
|
0.24390244
|
jalview.controller.AlignViewControllerTest.testSelectColumnsWithHighlightjalview.controller.AlignViewControllerTest.testSelectColumnsWithHighlight | 1PASS | ||
|
0.24390244
|
jalview.analysis.scoremodels.FeatureDistanceModelTest.testFindDistancesjalview.analysis.scoremodels.FeatureDistanceModelTest.testFindDistances | 1PASS | ||
|
0.24390244
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
|
0.24390244
|
jalview.datamodel.AlignmentViewTest.testGetVisibleAlignmentGapCharjalview.datamodel.AlignmentViewTest.testGetVisibleAlignmentGapChar | 1PASS | ||
|
0.24390244
|
jalview.gui.structurechooser.StructureChooserQuerySourceTest.buildPDBQueryTestjalview.gui.structurechooser.StructureChooserQuerySourceTest.buildPDBQueryTest | 1PASS | ||
|
0.24390244
|
jalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTestjalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTest | 1PASS | ||
|
0.24390244
|
jalview.gui.StructureChooserTest.openStructureFileForSequenceTestjalview.gui.StructureChooserTest.openStructureFileForSequenceTest | 1PASS | ||
|
0.24390244
|
jalview.schemes.PIDColourSchemeTest.testFindColour_ignoreGapsjalview.schemes.PIDColourSchemeTest.testFindColour_ignoreGaps | 1PASS | ||
|
0.24390244
|
jalview.io.StockholmFileTest.descriptionLineOutputjalview.io.StockholmFileTest.descriptionLineOutput | 1PASS | ||
|
0.24390244
|
jalview.gui.StructureChooserTest.openStructureFileForSequenceTestjalview.gui.StructureChooserTest.openStructureFileForSequenceTest | 1PASS | ||
|
0.24390244
|
jalview.project.Jalview2xmlTests.testColourByAnnotScoresjalview.project.Jalview2xmlTests.testColourByAnnotScores | 1PASS | ||
|
0.24390244
|
jalview.project.Jalview2xmlTests.testPAEsaveRestorejalview.project.Jalview2xmlTests.testPAEsaveRestore | 1PASS | ||
|
0.24390244
|
jalview.gui.AnnotationChooserTest.testBuildApplyToOptionsPanel_withSelectionGroupjalview.gui.AnnotationChooserTest.testBuildApplyToOptionsPanel_withSelectionGroup | 1PASS | ||
|
0.24390244
|
jalview.io.gff.ExonerateHelperTest.testAddExonerateGffToAlignmentjalview.io.gff.ExonerateHelperTest.testAddExonerateGffToAlignment | 1PASS | ||
|
0.24390244
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverExpandedviewsjalview.project.Jalview2xmlTests.testStoreAndRecoverExpandedviews | 1PASS | ||
|
0.24390244
|
jalview.io.RNAMLfileTest.testRnamlToStockholmIOjalview.io.RNAMLfileTest.testRnamlToStockholmIO | 1PASS | ||
|
0.24390244
|
jalview.gui.AnnotationChooserTest.testIsInActionScope_selectedScopejalview.gui.AnnotationChooserTest.testIsInActionScope_selectedScope | 1PASS | ||
|
0.24390244
|
jalview.gui.AnnotationChooserTest.testBuildShowHidePaneljalview.gui.AnnotationChooserTest.testBuildShowHidePanel | 1PASS | ||
|
0.24390244
|
jalview.io.vcf.VCFLoaderTest.testDoLoad_reverseStrandjalview.io.vcf.VCFLoaderTest.testDoLoad_reverseStrand | 1PASS | ||
|
0.24390244
|
jalview.project.Jalview2xmlTests.testCopyViewSettingsjalview.project.Jalview2xmlTests.testCopyViewSettings | 1PASS | ||
|
0.24390244
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
|
0.24390244
|
jalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTestjalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTest | 1PASS | ||
|
0.24390244
|
jalview.schemes.ClustalxColourSchemeTest.testFindColourjalview.schemes.ClustalxColourSchemeTest.testFindColour | 1PASS | ||
|
0.24390244
|
jalview.io.FeaturesFileTest.testPrintJalviewFormat_withFiltersjalview.io.FeaturesFileTest.testPrintJalviewFormat_withFilters | 1PASS | ||
|
0.24390244
|
jalview.io.FeaturesFileTest.testPrintGffFormatjalview.io.FeaturesFileTest.testPrintGffFormat | 1PASS | ||
|
0.24390244
|
jalview.io.AnnotatedPDBFileInputTest.testJalviewProjectRelocationAnnotationjalview.io.AnnotatedPDBFileInputTest.testJalviewProjectRelocationAnnotation | 1PASS | ||
|
0.24390244
|
jalview.math.SparseMatrixTest.testPreMultiply_tooManyColumnsjalview.math.SparseMatrixTest.testPreMultiply_tooManyColumns | 1PASS | ||
|
0.24390244
|
jalview.gui.PairwiseAlignmentPanelTest.testConstructor_noSelectionGroupjalview.gui.PairwiseAlignmentPanelTest.testConstructor_noSelectionGroup | 1PASS | ||
|
0.24390244
|
jalview.io.AnnotationFileIOTest.testProviderRestorejalview.io.AnnotationFileIOTest.testProviderRestore | 1PASS | ||
|
0.24390244
|
jalview.commands.TrimRegionCommandTest.testTrimLeft_noColumnsjalview.commands.TrimRegionCommandTest.testTrimLeft_noColumns | 1PASS | ||
|
0.24390244
|
jalview.gui.StructureChooserTest.fetchStructuresInfoMockedTestjalview.gui.StructureChooserTest.fetchStructuresInfoMockedTest | 1PASS | ||
|
0.24390244
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.24390244
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
|
0.24390244
|
jalview.gui.QuitHandlerTest.testForceQuitjalview.gui.QuitHandlerTest.testForceQuit | 1PASS | ||
|
0.24390244
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.24390244
|
jalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTestjalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTest | 1PASS | ||
|
0.24390244
|
jalview.io.FeaturesFileTest.testParse_mixedJalviewGffjalview.io.FeaturesFileTest.testParse_mixedJalviewGff | 1PASS | ||
|
0.24390244
|
jalview.io.FeaturesFileTest.testParse_jalviewFeaturesOnlyjalview.io.FeaturesFileTest.testParse_jalviewFeaturesOnly | 1PASS | ||
|
0.24390244
|
jalview.gui.AnnotationLabelsTest2.testIdWidthNoChangesjalview.gui.AnnotationLabelsTest2.testIdWidthNoChanges | 1PASS | ||
|
0.24390244
|
jalview.gui.AnnotationChooserTest.testBuildActionButtonsPaneljalview.gui.AnnotationChooserTest.testBuildActionButtonsPanel | 1PASS | ||
|
0.24390244
|
jalview.gui.AnnotationLabelsTest2.testIdWidthNoChangesjalview.gui.AnnotationLabelsTest2.testIdWidthNoChanges | 1PASS | ||
|
0.24390244
|
jalview.renderer.ScaleRendererTest.testCalculateMarksjalview.renderer.ScaleRendererTest.testCalculateMarks | 1PASS | ||
|
0.24390244
|
jalview.workers.AlignCalcManagerTest.testRemoveWorkerForAnnotationjalview.workers.AlignCalcManagerTest.testRemoveWorkerForAnnotation | 1PASS | ||
|
0.24390244
|
jalview.io.AnnotationExporterTest.testAnnotationExportAsCSVjalview.io.AnnotationExporterTest.testAnnotationExportAsCSV | 1PASS | ||
|
0.24390244
|
jalview.gui.QuitHandlerTest.testWaitForSaveQuitjalview.gui.QuitHandlerTest.testWaitForSaveQuit | 1PASS | ||
|
0.24390244
|
jalview.io.StockholmFileTest.dbrefOutputjalview.io.StockholmFileTest.dbrefOutput | 1PASS | ||
|
0.24390244
|
jalview.gui.StructureChooserTest.openStructureFileForSequenceTestjalview.gui.StructureChooserTest.openStructureFileForSequenceTest | 1PASS | ||
|
0.24390244
|
jalview.gui.AnnotationChooserTest.testSelectType_hideForSelectedjalview.gui.AnnotationChooserTest.testSelectType_hideForSelected | 1PASS | ||
|
0.24390244
|
jalview.project.Jalview2xmlTests.viewRefPdbAnnotationjalview.project.Jalview2xmlTests.viewRefPdbAnnotation | 1PASS | ||
|
0.24390244
|
jalview.bin.CommandsTest2.do_network_structureOpeningArgsTestjalview.bin.CommandsTest2.do_network_structureOpeningArgsTest | 1PASS | ||
|
0.24390244
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverNoOverviewjalview.project.Jalview2xmlTests.testStoreAndRecoverNoOverview | 1PASS | ||
|
0.24390244
|
jalview.project.Jalview2xmlTests.testSaveAndLoadAnnotationsPropertiesjalview.project.Jalview2xmlTests.testSaveAndLoadAnnotationsProperties | 1PASS | ||
|
0.24390244
|
jalview.project.Jalview2xmlTests.testAutoShowOverviewForLegacyProjectsjalview.project.Jalview2xmlTests.testAutoShowOverviewForLegacyProjects | 1PASS | ||
|
0.24390244
|
jalview.gui.StructureChooserTest.populateFilterComboBoxTestjalview.gui.StructureChooserTest.populateFilterComboBoxTest | 1PASS | ||
|
0.24390244
|
jalview.project.Jalview2xmlTests.testRNAStructureRecoveryjalview.project.Jalview2xmlTests.testRNAStructureRecovery | 1PASS | ||
|
0.24390244
|
jalview.analysis.GroupingTest.testMakeGroupsWithBothjalview.analysis.GroupingTest.testMakeGroupsWithBoth | 1PASS | ||
|
0.24390244
|
jalview.schemes.ClustalxColourSchemeTest.testFindColour_ignoreGapsjalview.schemes.ClustalxColourSchemeTest.testFindColour_ignoreGaps | 1PASS | ||
|
0.24390244
|
jalview.analysis.scoremodels.FeatureDistanceModelTest.testFindFeatureAt_PointFeaturejalview.analysis.scoremodels.FeatureDistanceModelTest.testFindFeatureAt_PointFeature | 1PASS | ||
|
0.24390244
|
jalview.analysis.scoremodels.FeatureDistanceModelTest.testFindDistances_withParamsjalview.analysis.scoremodels.FeatureDistanceModelTest.testFindDistances_withParams | 1PASS | ||
|
0.24390244
|
jalview.gui.AlignFrameTest.testNewView_dsRefPreservedjalview.gui.AlignFrameTest.testNewView_dsRefPreserved | 1PASS | ||
|
0.24390244
|
jalview.io.BackupFilesTest.backupsEnabledRollMaxTestjalview.io.BackupFilesTest.backupsEnabledRollMaxTest | 1PASS | ||
|
0.24390244
|
jalview.gui.AnnotationChooserTest.testBuildShowHideOptionsPaneljalview.gui.AnnotationChooserTest.testBuildShowHideOptionsPanel | 1PASS | ||
|
0.24390244
|
jalview.bin.argparser.ArgParserTest.bootstrapArgsValuesAndHeadlessModeTestjalview.bin.argparser.ArgParserTest.bootstrapArgsValuesAndHeadlessModeTest | 1PASS | ||
|
0.24390244
|
jalview.ext.ensembl.EnsemblGeneTest.testGetIdentifyingFeaturesjalview.ext.ensembl.EnsemblGeneTest.testGetIdentifyingFeatures | 1PASS | ||
|
0.24390244
|
jalview.io.BackupFilesTest.backupsEnabledSingleFileBackupTestjalview.io.BackupFilesTest.backupsEnabledSingleFileBackupTest | 1PASS | ||
|
0.24390244
|
jalview.gui.AnnotationChooserTest.testDeselectType_hideForSelectedjalview.gui.AnnotationChooserTest.testDeselectType_hideForSelected | 1PASS | ||
|
0.24390244
|
jalview.gui.StructureChooserTest.openStructureFileForSequenceTestjalview.gui.StructureChooserTest.openStructureFileForSequenceTest | 1PASS | ||
|
0.24390244
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.24390244
|
jalview.gui.AnnotationChooserTest.testResetOriginalStatejalview.gui.AnnotationChooserTest.testResetOriginalState | 1PASS | ||
|
0.24390244
|
jalview.ext.jmol.JmolViewerTest.testSingleSeqViewJMoljalview.ext.jmol.JmolViewerTest.testSingleSeqViewJMol | 1PASS | ||
|
0.24390244
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.24390244
|
jalview.io.vcf.VCFLoaderTest.testDoLoad_vepCsqjalview.io.vcf.VCFLoaderTest.testDoLoad_vepCsq | 1PASS | ||
|
0.24390244
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.24390244
|
jalview.math.SparseMatrixTest.testPreMultiply_sparseProductjalview.math.SparseMatrixTest.testPreMultiply_sparseProduct | 1PASS | ||
|
0.24390244
|
jalview.io.StockholmFileTest.pfamFileDataExtractionjalview.io.StockholmFileTest.pfamFileDataExtraction | 1PASS | ||
|
0.24390244
|
jalview.ext.jmol.JmolParserTest.testAlignmentLoaderjalview.ext.jmol.JmolParserTest.testAlignmentLoader | 1PASS | ||
|
0.24390244
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.24390244
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.24390244
|
jalview.bin.CommandsTest2.do_network_structureOpeningArgsTestjalview.bin.CommandsTest2.do_network_structureOpeningArgsTest | 1PASS | ||
|
0.24390244
|
jalview.gui.AnnotationChooserTest.testSelectType_showForAlljalview.gui.AnnotationChooserTest.testSelectType_showForAll | 1PASS | ||
|
0.24390244
|
jalview.util.ColorUtilsTest.testParseColourStringjalview.util.ColorUtilsTest.testParseColourString | 1PASS | ||
|
0.24390244
|
jalview.gui.StructureChooserTest.sanitizeSeqNameTestjalview.gui.StructureChooserTest.sanitizeSeqNameTest | 1PASS | ||
|
0.24390244
|
jalview.io.cache.JvCacheableInputBoxTest.updateCacheTestjalview.io.cache.JvCacheableInputBoxTest.updateCacheTest | 1PASS | ||
|
0.24390244
|
jalview.renderer.seqfeatures.FeatureRendererTest.testFindAllFeaturesjalview.renderer.seqfeatures.FeatureRendererTest.testFindAllFeatures | 1PASS | ||
|
0.24390244
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
|
0.24390244
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.24390244
|
jalview.bin.argparser.ArgParserTest.parseSubValsAndLinkedIdsTestjalview.bin.argparser.ArgParserTest.parseSubValsAndLinkedIdsTest | 1PASS | ||
|
0.24390244
|
jalview.gui.QuitHandlerTest.testUnsavedChangesjalview.gui.QuitHandlerTest.testUnsavedChanges | 1PASS | ||
|
0.24390244
|
jalview.io.AnnotationFileIOTest.testCalcIdRestorejalview.io.AnnotationFileIOTest.testCalcIdRestore | 1PASS | ||
|
0.24390244
|
jalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTestjalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTest | 1PASS | ||
|
0.24390244
|
jalview.analysis.scoremodels.SecondaryStructureDistanceModelTest.testFindDistancesjalview.analysis.scoremodels.SecondaryStructureDistanceModelTest.testFindDistances | 1PASS | ||
|
0.24390244
|
jalview.io.SequenceAnnotationReportTest.testAppendFeature_withScorejalview.io.SequenceAnnotationReportTest.testAppendFeature_withScore | 1PASS | ||
|
0.24390244
|
jalview.io.JSONFileTest.testGrpParsed_colourNonejalview.io.JSONFileTest.testGrpParsed_colourNone | 1PASS | ||
|
0.24390244
|
jalview.gui.AnnotationChooserTest.testDeselectType_hideForAlljalview.gui.AnnotationChooserTest.testDeselectType_hideForAll | 1PASS | ||
|
0.24390244
|
jalview.gui.structurechooser.StructureChooserQuerySourceTest.cascadingThreeDBandPDBQuerysjalview.gui.structurechooser.StructureChooserQuerySourceTest.cascadingThreeDBandPDBQuerys | 1PASS | ||
|
0.24390244
|
jalview.gui.QuitHandlerTest.testSavedProjectChangesjalview.gui.QuitHandlerTest.testSavedProjectChanges | 1PASS | ||
|
0.24390244
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverGeneLocusjalview.project.Jalview2xmlTests.testStoreAndRecoverGeneLocus | 1PASS | ||
|
0.24390244
|
jalview.gui.QuitHandlerTest.testInstantQuitjalview.gui.QuitHandlerTest.testInstantQuit | 1PASS | ||
|
0.24390244
|
jalview.gui.PopupMenuTest.testBuildLinkMenujalview.gui.PopupMenuTest.testBuildLinkMenu | 1PASS | ||
|
0.24390244
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverPDBEntryjalview.project.Jalview2xmlTests.testStoreAndRecoverPDBEntry | 1PASS | ||
|
0.24390244
|
jalview.analysis.AverageDistanceEngineTest.testUPGMAEnginejalview.analysis.AverageDistanceEngineTest.testUPGMAEngine | 1PASS | ||
|
0.24390244
|
jalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTestjalview.bin.argparser.ArgParserTest.parseAutoIndexAndSubstitutionsTest | 1PASS | ||
|
0.24390244
|
jalview.project.Jalview2xmlTests.noDuplicatePdbMappingsMadejalview.project.Jalview2xmlTests.noDuplicatePdbMappingsMade | 1PASS | ||
|
0.24390244
|
jalview.analysis.scoremodels.FeatureDistanceModelTest.testFeatureScoreModel_HiddenColumnsjalview.analysis.scoremodels.FeatureDistanceModelTest.testFeatureScoreModel_HiddenColumns | 1PASS | ||
|
0.24390244
|
jalview.util.StringUtilsTest.testParseIntjalview.util.StringUtilsTest.testParseInt | 1PASS | ||
|
0.24390244
|
jalview.renderer.seqfeatures.FeatureRendererTest.testFilterFeaturesForDisplayjalview.renderer.seqfeatures.FeatureRendererTest.testFilterFeaturesForDisplay | 1PASS | ||
|
0.24390244
|
jalview.gui.AlignViewportTest.testUpdateConservation_qualityOnlyjalview.gui.AlignViewportTest.testUpdateConservation_qualityOnly | 1PASS | ||
|
0.24390244
|
jalview.io.AnnotationFileIOTest.testAnnotateAlignmentViewjalview.io.AnnotationFileIOTest.testAnnotateAlignmentView | 1PASS | ||
|
0.24390244
|
jalview.io.StockholmFileTest.pfamFileIOjalview.io.StockholmFileTest.pfamFileIO | 1PASS | ||
|
0.24390244
|
jalview.ext.jmol.JmolCommandsTest.testOpenSessionjalview.ext.jmol.JmolCommandsTest.testOpenSession | 1PASS | ||
|
0.24390244
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.24390244
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.24390244
|
jalview.gui.PopupMenuTest.testConfigureReferenceAnnotationsMenujalview.gui.PopupMenuTest.testConfigureReferenceAnnotationsMenu | 1PASS | ||
|
0.24390244
|
jalview.analysis.scoremodels.SecondaryStructureDistanceModelTest.testFindDistancesjalview.analysis.scoremodels.SecondaryStructureDistanceModelTest.testFindDistances | 1PASS | ||
|
0.24390244
|
jalview.gui.structurechooser.StructureChooserQuerySourceTest.buildThreeDBQueryTestjalview.gui.structurechooser.StructureChooserQuerySourceTest.buildThreeDBQueryTest | 1PASS | ||
|
0.24390244
|
jalview.io.BackupFilesTest.backupsEnabledNoRollMaxTestjalview.io.BackupFilesTest.backupsEnabledNoRollMaxTest | 1PASS | ||
|
0.24390244
|
jalview.io.SequenceAnnotationReportTest.testAppendFeature_disulfideBondjalview.io.SequenceAnnotationReportTest.testAppendFeature_disulfideBond | 1PASS | ||
|
0.24390244
|
jalview.analysis.scoremodels.SecondaryStructureDistanceModelTest.testFindDistancesjalview.analysis.scoremodels.SecondaryStructureDistanceModelTest.testFindDistances | 1PASS | ||
|
0.24390244
|
jalview.io.CrossRef2xmlTests.openCrossrefsForEnsemblTwicejalview.io.CrossRef2xmlTests.openCrossrefsForEnsemblTwice | 1PASS | ||
|
0.24390244
|
jalview.gui.AssociatePDBFileTest.testAssociatePDBFilejalview.gui.AssociatePDBFileTest.testAssociatePDBFile | 1PASS | ||
|
0.24390244
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverAnnotationRowElementColoursjalview.project.Jalview2xmlTests.testStoreAndRecoverAnnotationRowElementColours | 1PASS | ||
|
0.24390244
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.24390244
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
|
0.24390244
|
jalview.project.Jalview2xmlTests.testSaveAndLoadAnnotationBasedTreejalview.project.Jalview2xmlTests.testSaveAndLoadAnnotationBasedTree | 1PASS | ||
|
0.24390244
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.24390244
|
jalview.project.Jalview2xmlTests.testSaveLoadFeatureColoursAndFiltersjalview.project.Jalview2xmlTests.testSaveLoadFeatureColoursAndFilters | 1PASS | ||
|
0.24390244
|
jalview.analysis.scoremodels.FeatureDistanceModelTest.testFeatureScoreModel_hiddenFirstColumnjalview.analysis.scoremodels.FeatureDistanceModelTest.testFeatureScoreModel_hiddenFirstColumn | 1PASS | ||
|
0.24390244
|
jalview.gui.ColourMenuHelperTest.testAddMenuItems_nucleotidejalview.gui.ColourMenuHelperTest.testAddMenuItems_nucleotide | 1PASS | ||
|
0.24390244
|
jalview.gui.AlignViewportTest.testShowOrDontShowOccupancyjalview.gui.AlignViewportTest.testShowOrDontShowOccupancy | 1PASS | ||
|
0.24390244
|
jalview.ext.jmol.JmolViewerTest.testAddStrToSingleSeqViewJMoljalview.ext.jmol.JmolViewerTest.testAddStrToSingleSeqViewJMol | 1PASS | ||
|
0.24390244
|
jalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTestjalview.bin.CommandsTest.argFilesGlobAndSubstitutionsTest | 1PASS | ||
|
0.24390244
|
jalview.io.SequenceAnnotationReportTest.testAppendFeature_colouredByAttributejalview.io.SequenceAnnotationReportTest.testAppendFeature_colouredByAttribute | 1PASS | ||
|
0.24390244
|
jalview.gui.AnnotationChooserTest.testDeselectType_showForSelectedjalview.gui.AnnotationChooserTest.testDeselectType_showForSelected | 1PASS | ||
|
0.24390244
|
jalview.datamodel.AlignmentViewTest.testGetVisibleContigsjalview.datamodel.AlignmentViewTest.testGetVisibleContigs | 1PASS | ||
|
0.24390244
|
jalview.io.FeaturesFileTest.testPrintGffFormat_withFiltersjalview.io.FeaturesFileTest.testPrintGffFormat_withFilters | 1PASS | ||
|
0.24390244
|
jalview.gui.StructureChooserTest.openStructureFileForSequenceTestjalview.gui.StructureChooserTest.openStructureFileForSequenceTest | 1PASS | ||
|
0.24390244
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.24390244
|
jalview.project.Jalview2xmlTests.testStoreAndRestoreIDwidthAndAnnotationHeightjalview.project.Jalview2xmlTests.testStoreAndRestoreIDwidthAndAnnotationHeight | 1PASS | ||
|
0.24390244
|
jalview.math.SparseMatrixTest.testTqli_matchesMatrixjalview.math.SparseMatrixTest.testTqli_matchesMatrix | 1PASS | ||
|
0.24390244
|
jalview.gui.AnnotationChooserTest.testDeselectType_showForAlljalview.gui.AnnotationChooserTest.testDeselectType_showForAll | 1PASS | ||
|
0.24390244
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverGroupRepSeqsjalview.project.Jalview2xmlTests.testStoreAndRecoverGroupRepSeqs | 1PASS | ||
|
0.24390244
|
jalview.gui.QuitHandlerTest.testSavedAlignmentChangesjalview.gui.QuitHandlerTest.testSavedAlignmentChanges | 1PASS | ||
|
0.24390244
|
jalview.gui.AnnotationLabelsTest2.testIdWidthChangesjalview.gui.AnnotationLabelsTest2.testIdWidthChanges | 1PASS | ||
|
0.24390244
|
jalview.project.Jalview2xmlTests.testTCoffeeScoresjalview.project.Jalview2xmlTests.testTCoffeeScores | 1PASS | ||
|
0.24390244
|
jalview.project.Jalview2xmlTests.testMergeDatasetsforViewsjalview.project.Jalview2xmlTests.testMergeDatasetsforViews | 1PASS | ||
|
0.24390244
|
jalview.util.matcher.MatcherTest.testConstructorjalview.util.matcher.MatcherTest.testConstructor | 1PASS | ||
|
0.24390244
|
jalview.io.vcf.VCFLoaderTest.testDoLoadjalview.io.vcf.VCFLoaderTest.testDoLoad | 1PASS | ||
|
0.24390244
|
jalview.io.BackupFilesTest.noBackupsEnabledTestjalview.io.BackupFilesTest.noBackupsEnabledTest | 1PASS | ||
|
0.24390244
|
jalview.bin.argparser.ArgParserTest.checkArgsWithinTypesTestjalview.bin.argparser.ArgParserTest.checkArgsWithinTypesTest | 1PASS | ||
|
0.24390244
|
jalview.schemes.AnnotationColourGradientTest.testFindColour_aboveThresholdjalview.schemes.AnnotationColourGradientTest.testFindColour_aboveThreshold | 1PASS | ||
|
0.24390244
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverReferenceSeqSettingsjalview.project.Jalview2xmlTests.testStoreAndRecoverReferenceSeqSettings | 1PASS | ||
|
0.24390244
|
jalview.io.SequenceAnnotationReportTest.testCreateSequenceAnnotationReport_withEllipsisjalview.io.SequenceAnnotationReportTest.testCreateSequenceAnnotationReport_withEllipsis | 1PASS | ||
|
0.24390244
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.24390244
|
jalview.util.ColorUtilsTest.testBrighterThanjalview.util.ColorUtilsTest.testBrighterThan | 1PASS | ||
|
0.24390244
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.24390244
|
jalview.bin.argparser.ArgParserTest.checkArgsWithinTypesTestjalview.bin.argparser.ArgParserTest.checkArgsWithinTypesTest | 1PASS | ||
|
0.24390244
|
jalview.project.Jalview2xmlTests.gatherViewsHerejalview.project.Jalview2xmlTests.gatherViewsHere | 1PASS | ||
|
0.24390244
|
jalview.gui.SeqCanvasTest.testClear_HighlightAndSelectionjalview.gui.SeqCanvasTest.testClear_HighlightAndSelection | 1PASS | ||
|
0.24390244
|
jalview.project.Jalview2xmlTests.testPcaViewAssociationjalview.project.Jalview2xmlTests.testPcaViewAssociation | 1PASS | ||
|
0.24390244
|
jalview.io.SequenceAnnotationReportTest.testCreateSequenceAnnotationReportjalview.io.SequenceAnnotationReportTest.testCreateSequenceAnnotationReport | 1PASS | ||
|
0.24390244
|
jalview.project.Jalview2xmlTests.testStoreAndRecoverColourThresholdsjalview.project.Jalview2xmlTests.testStoreAndRecoverColourThresholds | 1PASS | ||
|
0.24390244
|
jalview.analysis.scoremodels.FeatureDistanceModelTest.testFeatureScoreModeljalview.analysis.scoremodels.FeatureDistanceModelTest.testFeatureScoreModel | 1PASS | ||
|
0.24390244
|
jalview.project.Jalview2xmlTests.testMergeDatasetsforManyViewsjalview.project.Jalview2xmlTests.testMergeDatasetsforManyViews | 1PASS | ||
|
0.24390244
|
jalview.io.BackupFilesTest.backupsEnabledReverseRollMaxTestjalview.io.BackupFilesTest.backupsEnabledReverseRollMaxTest | 1PASS | ||
|
0.24390244
|
jalview.gui.QuitHandlerTest.testNoGUIUnsavedChangesjalview.gui.QuitHandlerTest.testNoGUIUnsavedChanges | 1PASS | ||
|
0.19512194
|
jalview.datamodel.AllColsIteratorTest.testHasNextAndNextjalview.datamodel.AllColsIteratorTest.testHasNextAndNext | 1PASS | ||
|
0.14634146
|
jalview.datamodel.features.FeatureStoreTest.testFindFeatures_nestedjalview.datamodel.features.FeatureStoreTest.testFindFeatures_nested | 1PASS | ||
|
0.09756097
|
jalview.bin.argparser.ArgParserTest.bootstrapArgsValuesAndHeadlessModeTestjalview.bin.argparser.ArgParserTest.bootstrapArgsValuesAndHeadlessModeTest | 1PASS | ||
|
0.09756097
|
jalview.bin.argparser.ArgParserTest.parseSubValsAndLinkedIdsTestjalview.bin.argparser.ArgParserTest.parseSubValsAndLinkedIdsTest | 1PASS | ||
|
0.048780486
|
jalview.bin.CommandsTest.allLinkedIdsTestjalview.bin.CommandsTest.allLinkedIdsTest | 1PASS | ||
|
0.048780486
|
jalview.datamodel.features.FeatureMatcherSetTest.testFromStringjalview.datamodel.features.FeatureMatcherSetTest.testFromString | 1PASS | ||
|
0.048780486
|
jalview.bin.CommandsTest2.do_structureOpeningArgsTestjalview.bin.CommandsTest2.do_structureOpeningArgsTest | 1PASS | ||
|
0.048780486
|
jalview.io.SequenceAnnotationReportTest.testAppendFeatures_longTextjalview.io.SequenceAnnotationReportTest.testAppendFeatures_longText | 1PASS | ||
|
0.048780486
|
jalview.util.ColorUtilsTest.testDarkerThanjalview.util.ColorUtilsTest.testDarkerThan | 1PASS | ||
|
0.048780486
|
jalview.renderer.seqfeatures.FeatureRendererTest.testFindComplementFeaturesAtResiduejalview.renderer.seqfeatures.FeatureRendererTest.testFindComplementFeaturesAtResidue | 1PASS | ||
|
0.048780486
|
jalview.schemes.AnnotationColourGradientTest.testFindColour_originalColoursjalview.schemes.AnnotationColourGradientTest.testFindColour_originalColours | 1PASS | ||
|
0.048780486
|
jalview.datamodel.features.FeatureStoreTest.testGetFeatureGroupsjalview.datamodel.features.FeatureStoreTest.testGetFeatureGroups | 1PASS |
| 1 | /* | ||||||
| 2 | * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) | ||||||
| 3 | * Copyright (C) $$Year-Rel$$ The Jalview Authors | ||||||
| 4 | * | ||||||
| 5 | * This file is part of Jalview. | ||||||
| 6 | * | ||||||
| 7 | * Jalview is free software: you can redistribute it and/or | ||||||
| 8 | * modify it under the terms of the GNU General Public License | ||||||
| 9 | * as published by the Free Software Foundation, either version 3 | ||||||
| 10 | * of the License, or (at your option) any later version. | ||||||
| 11 | * | ||||||
| 12 | * Jalview is distributed in the hope that it will be useful, but | ||||||
| 13 | * WITHOUT ANY WARRANTY; without even the implied warranty | ||||||
| 14 | * of MERCHANTABILITY or FITNESS FOR A PARTICULAR | ||||||
| 15 | * PURPOSE. See the GNU General Public License for more details. | ||||||
| 16 | * | ||||||
| 17 | * You should have received a copy of the GNU General Public License | ||||||
| 18 | * along with Jalview. If not, see <http://www.gnu.org/licenses/>. | ||||||
| 19 | * The Jalview Authors are detailed in the 'AUTHORS' file. | ||||||
| 20 | */ | ||||||
| 21 | package jalview.ws.uimodel; | ||||||
| 22 | |||||||
|
|||||||
| 23 | public class AlignAnalysisUIText | ||||||
| 24 | { | ||||||
| 25 | |||||||
| 26 | private String serviceType; | ||||||
| 27 | |||||||
|
|||||||
| 28 | 0 | public String getServiceType()... |
|||||
| 29 | { | ||||||
| 30 | 0 | return serviceType; | |||||
| 31 | } | ||||||
| 32 | |||||||
| 33 | private Class client; | ||||||
| 34 | |||||||
| 35 | private String calcId; | ||||||
| 36 | |||||||
|
|||||||
| 37 | 0 | public String getCalcId()... |
|||||
| 38 | { | ||||||
| 39 | 0 | return calcId; | |||||
| 40 | } | ||||||
| 41 | |||||||
| 42 | private String AAconToggle, AAconToggleTooltip, AAeditSettings, | ||||||
| 43 | AAeditSettingsTooltip; | ||||||
| 44 | |||||||
| 45 | private boolean isNa; | ||||||
| 46 | |||||||
|
|||||||
| 47 | 0 | public boolean isNa()... |
|||||
| 48 | { | ||||||
| 49 | 0 | return isNa; | |||||
| 50 | } | ||||||
| 51 | |||||||
|
|||||||
| 52 | 0 | public boolean isPr()... |
|||||
| 53 | { | ||||||
| 54 | 0 | return isPr; | |||||
| 55 | } | ||||||
| 56 | |||||||
|
|||||||
| 57 | 0 | public boolean isAA()... |
|||||
| 58 | { | ||||||
| 59 | 0 | return isAA; | |||||
| 60 | } | ||||||
| 61 | |||||||
| 62 | private boolean isPr; | ||||||
| 63 | |||||||
| 64 | private boolean isAA; | ||||||
| 65 | |||||||
|
|||||||
| 66 | 12 | public AlignAnalysisUIText(String serviceType, Class<?> client,... |
|||||
| 67 | String calcId, boolean acceptNucl, boolean acceptProt, | ||||||
| 68 | boolean acceptGaps, String toggle, String toggleTooltip, | ||||||
| 69 | String settings, String settingsTooltip) | ||||||
| 70 | { | ||||||
| 71 | 12 | this.serviceType = serviceType; | |||||
| 72 | 12 | this.calcId = calcId; | |||||
| 73 | 12 | isNa = acceptNucl; | |||||
| 74 | 12 | isPr = acceptProt; | |||||
| 75 | 12 | isAA = acceptGaps; | |||||
| 76 | 12 | this.client = client; | |||||
| 77 | 12 | this.AAconToggle = toggle; | |||||
| 78 | 12 | this.AAconToggleTooltip = toggleTooltip; | |||||
| 79 | 12 | this.AAeditSettings = settings; | |||||
| 80 | 12 | this.AAeditSettingsTooltip = settingsTooltip; | |||||
| 81 | } | ||||||
| 82 | |||||||
|
|||||||
| 83 | 2374 | public Class getClient()... |
|||||
| 84 | { | ||||||
| 85 | 2374 | return client; | |||||
| 86 | } | ||||||
| 87 | |||||||
|
|||||||
| 88 | 0 | public void setClient(Class client)... |
|||||
| 89 | { | ||||||
| 90 | 0 | this.client = client; | |||||
| 91 | } | ||||||
| 92 | |||||||
|
|||||||
| 93 | 2360 | public String getAAconToggle()... |
|||||
| 94 | { | ||||||
| 95 | 2360 | return AAconToggle; | |||||
| 96 | } | ||||||
| 97 | |||||||
|
|||||||
| 98 | 0 | public void setAAconToggle(String aAconToggle)... |
|||||
| 99 | { | ||||||
| 100 | 0 | AAconToggle = aAconToggle; | |||||
| 101 | } | ||||||
| 102 | |||||||
|
|||||||
| 103 | 2360 | public String getAAconToggleTooltip()... |
|||||
| 104 | { | ||||||
| 105 | 2360 | return AAconToggleTooltip; | |||||
| 106 | } | ||||||
| 107 | |||||||
|
|||||||
| 108 | 0 | public void setAAconToggleTooltip(String aAconToggleTooltip)... |
|||||
| 109 | { | ||||||
| 110 | 0 | AAconToggleTooltip = aAconToggleTooltip; | |||||
| 111 | } | ||||||
| 112 | |||||||
|
|||||||
| 113 | 2360 | public String getAAeditSettings()... |
|||||
| 114 | { | ||||||
| 115 | 2360 | return AAeditSettings; | |||||
| 116 | } | ||||||
| 117 | |||||||
|
|||||||
| 118 | 0 | public void setAAeditSettings(String aAeditSettings)... |
|||||
| 119 | { | ||||||
| 120 | 0 | AAeditSettings = aAeditSettings; | |||||
| 121 | } | ||||||
| 122 | |||||||
|
|||||||
| 123 | 2360 | public String getAAeditSettingsTooltip()... |
|||||
| 124 | { | ||||||
| 125 | 2360 | return AAeditSettingsTooltip; | |||||
| 126 | } | ||||||
| 127 | |||||||
|
|||||||
| 128 | 0 | public void setAAeditSettingsTooltip(String aAeditSettingsTooltip)... |
|||||
| 129 | { | ||||||
| 130 | 0 | AAeditSettingsTooltip = aAeditSettingsTooltip; | |||||
| 131 | } | ||||||
| 132 | |||||||
| 133 | } |
