Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
ContactMapHolderI	25	0	0	-1.0 -	Show methods

Class ContactMapHolderI

Class ContactMapHolderI	Line # 25	Total Statements 0	Complexity 0	TOTAL Coverage -1.0 -

 

Contributing tests

Source view

1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.datamodel;
22
23		import java.util.Collection;
24
		- Uncovered Elements: 0 (0) Complexity: 0 Complexity Density: -
25		public interface ContactMapHolderI
26		{
27		/**
28		* resolve a contact list instance (if any) associated with the annotation row
29		* and column position Columns of ContactMap are indexed relative to context
30		* object (columns of alignment, positions on sequence relative to
31		* sequence.getStart())
32		*
33		* @param _aa
34		* @param column
35		* - base 0 column index
36		* @return
37		*/
38		ContactListI getContactListFor(AlignmentAnnotation _aa, int column);
39
40		AlignmentAnnotation addContactList(ContactMatrixI cm);
41
42		Collection<ContactMatrixI> getContactMaps();
43
44		public ContactMatrixI getContactMatrixFor(AlignmentAnnotation ann);
45
46		void addContactListFor(AlignmentAnnotation annotation, ContactMatrixI cm);
47
48		}