Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
JalviewJabawsTestUtils	33	20	8	0.00%	Show methods

Class JalviewJabawsTestUtils

Class JalviewJabawsTestUtils	Line # 33	Total Statements 20	Complexity 8	TOTAL Coverage 0.00%
setUpJvOptionPane() : void   setUpJvOptionPane() : void	3636	2.02	1.01	0.0 0.00%
setUpBeforeClass() : void   setUpBeforeClass() : void	4343	0.00	1.01	-1.0 -1.0 -
tearDownAfterClass() : void   tearDownAfterClass() : void	4848	0.00	1.01	-1.0 -1.0 -
testAnnotExport() : void   testAnnotExport() : void	6060	1.01	1.01	0.0 0.00%
getJabawsDiscoverer() : jalview.ws.jws2.Jws2Discoverer   getJabawsDiscoverer() : jalview.ws.jws2.Jws2Discoverer	6666	1.01	1.01	0.0 0.00%
getJabawsDiscoverer(boolean) : Jws2Discoverer   getJabawsDiscoverer(boolean) : Jws2Discoverer	8585	16.016	3.03	0.0 0.00%

 

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.ws.jabaws;
22
23		import jalview.gui.JvOptionPane;
24		import jalview.ws.jws2.Jws2Discoverer;
25
26		import java.util.Vector;
27
28		import org.testng.Assert;
29		import org.testng.annotations.AfterClass;
30		import org.testng.annotations.BeforeClass;
31		import org.testng.annotations.Test;
32
		0% Uncovered Elements: 28 (28) Complexity: 8 Complexity Density: 0.4
33		public class JalviewJabawsTestUtils
34		{
35
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
36	0	@BeforeClass(alwaysRun = true)...
37		public void setUpJvOptionPane()
38		{
39	0	JvOptionPane.setInteractiveMode(false);
40	0	JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
41		}
42
		- Uncovered Elements: 0 (0) Complexity: 1 Complexity Density: -
43	0	@BeforeClass(alwaysRun = true)...
44		public static void setUpBeforeClass() throws Exception
45		{
46		}
47
		- Uncovered Elements: 0 (0) Complexity: 1 Complexity Density: -
48	0	@AfterClass(alwaysRun = true)...
49		public static void tearDownAfterClass() throws Exception
50		{
51		}
52
53		/**
54		* test servers
55		*/
56		private static String[] serviceUrls = new String[] {
57		"http://localhost:8080/jabaws",
58		"http://www.compbio.dundee.ac.uk/jabaws" };
59
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1 4-
60	0	@Test(groups = { "Functional" }, enabled = false)...
61		public void testAnnotExport()
62		{
63	0	Assert.fail("Not yet implemented");
64		}
65
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
66	0	public static jalview.ws.jws2.Jws2Discoverer getJabawsDiscoverer()...
67		{
68	0	return getJabawsDiscoverer(true);
69		}
70
71		/**
72		* Returns a service discoverer that queries localhost and compbio urls.
73		* <p>
74		* If using this method, be sure to have read-only Jalview properties, to
75		* avoid writing the test urls to .jalview_properties. This can be done by
76		* either
77		* <ul>
78		* <li>running Jalview main with arguments -props propFileName</li>
79		* <li>calling Cache.loadProperties(filename)</li>
80		* <ul>
81		*
82		* @param localhost
83		* @return
84		*/
		0% Uncovered Elements: 18 (18) Complexity: 3 Complexity Density: 0.19
85	0	public static Jws2Discoverer getJabawsDiscoverer(boolean localhost)...
86		{
87	0	jalview.ws.jws2.Jws2Discoverer disc = jalview.ws.jws2.Jws2Discoverer
88		.getDiscoverer();
89	0	String svcurls = "";
90	0	if (localhost)
91		{
92	0	int p = 0;
93	0	Vector<String> services = new Vector<String>();
94	0	for (String url : JalviewJabawsTestUtils.serviceUrls)
95		{
96	0	svcurls += url + "; ";
97	0	services.add(url);
98		}
99	0	;
100	0	Jws2Discoverer.getDiscoverer().setServiceUrls(services);
101		}
102	0	try
103		{
104	0	disc.run();
105		} catch (Exception e)
106		{
107	0	e.printStackTrace();
108	0	Assert.fail(
109		"Aborting. Problem discovering services. Tried " + svcurls);
110		}
111	0	Assert.assertTrue(disc.getServices().size() > 0,
112		"Failed to discover any services at ");
113	0	return disc;
114		}
115
116		}