Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
AnnotationPojo	25	10	10	0.990%	Show methods

Class AnnotationPojo

Class AnnotationPojo	Line # 25	Total Statements 10	Complexity 10	TOTAL Coverage 0.990%
getDisplayCharacter() : String   getDisplayCharacter() : String	5252	1.01	1.01	1.0 1.0100%
setDisplayCharacter(String) : void   setDisplayCharacter(String) : void	5757	1.01	1.01	1.0 1.0100%
getDescription() : String   getDescription() : String	6262	1.01	1.01	1.0 1.0100%
setDescription(String) : void   setDescription(String) : void	6767	1.01	1.01	1.0 1.0100%
getSecondaryStructure() : char   getSecondaryStructure() : char	7272	1.01	1.01	1.0 1.0100%
setSecondaryStructure(char) : void   setSecondaryStructure(char) : void	7777	1.01	1.01	1.0 1.0100%
getValue() : float   getValue() : float	8282	1.01	1.01	1.0 1.0100%
setValue(float) : void   setValue(float) : void	8787	1.01	1.01	1.0 1.0100%
getColour() : String   getColour() : String	9292	1.01	1.01	1.0 1.0100%
setColour(String) : void   setColour(String) : void	9797	1.01	1.01	0.0 0.00%

 

Contributing tests

Contributing tests

Select all

	Test contribution	Test	Result	Actions
	0.9	jalview.io.JSONFileTest.testBioJSONRoundTripWithColourSchemeNonejalview.io.JSONFileTest.testBioJSONRoundTripWithColourSchemeNone	1PASS

 

Source view

1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.json.binding.biojson.v1;
22
23		import com.github.reinert.jjschema.Attributes;
24
		90% Uncovered Elements: 2 (20) Complexity: 10 Complexity Density: 1
25		public class AnnotationPojo
26		{
27		@Attributes(
28		required = false,
29		description = "Display character for the given annotation")
30		private String displayCharacter;
31
32		@Attributes(
33		required = false,
34		description = "Description for the annotation")
35		private String description;
36
37		@Attributes(
38		required = true,
39		enums =
40		{ "E", "H", "\u0000", ")", "(" },
41		description = "Determines what is rendered for the secondary </br>structure <ul><li>’E’ - indicates Beta Sheet/Strand <li>’H’ - indicates alpha helix </li><li> ‘\\u0000’ - indicates blank</li></ul></br>For RNA Helix (only shown when working with</br> nucleotide sequences): <ul><li> ‘(’ - indicates bases pair with columns upstream</br> (to right) </li><li> ’(’ - indicate region pairs with bases to the left</li></ul>")
42		private char secondaryStructure;
43
44		@Attributes(required = false, description = "Value of the annotation")
45		private float value;
46
47		@Attributes(
48		required = false,
49		description = "Colour of the annotation position in hex string.")
50		private String colour;
51
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
52	175	public String getDisplayCharacter()...
53		{
54	175	return displayCharacter;
55		}
56
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
57	175	public void setDisplayCharacter(String displayCharacter)...
58		{
59	175	this.displayCharacter = displayCharacter;
60		}
61
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
62	175	public String getDescription()...
63		{
64	175	return description;
65		}
66
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
67	175	public void setDescription(String description)...
68		{
69	175	this.description = description;
70		}
71
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
72	175	public char getSecondaryStructure()...
73		{
74	175	return secondaryStructure;
75		}
76
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
77	175	public void setSecondaryStructure(char secondaryStructure)...
78		{
79	175	this.secondaryStructure = secondaryStructure;
80		}
81
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
82	175	public float getValue()...
83		{
84	175	return value;
85		}
86
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
87	175	public void setValue(float value)...
88		{
89	175	this.value = value;
90		}
91
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
92	175	public String getColour()...
93		{
94	175	return colour;
95		}
96
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
97	0	public void setColour(String colour)...
98		{
99	0	this.colour = colour;
100		}
101
102		}