Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
EbiFileRetrievedProxy	29	15	6	0.00%	Show methods

Class EbiFileRetrievedProxy

Class EbiFileRetrievedProxy	Line # 29	Total Statements 15	Complexity 6	TOTAL Coverage 0.00%
getRawRecords() : StringBuffer   getRawRecords() : StringBuffer	3737	15.015	6.06	0.0 0.00%

 

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.ws.dbsources;
22
23		import jalview.ws.seqfetcher.DbSourceProxyImpl;
24
25		import java.io.BufferedReader;
26		import java.io.File;
27		import java.io.FileReader;
28
		0% Uncovered Elements: 22 (22) Complexity: 6 Complexity Density: 0.4
29		public abstract class EbiFileRetrievedProxy extends DbSourceProxyImpl
30		{
31
32		/**
33		* temp path to retrieved file
34		*/
35		protected String file = null;
36
		0% Uncovered Elements: 21 (21) Complexity: 6 Complexity Density: 0.4
37	0	public StringBuffer getRawRecords()...
38		{
39	0	if (file == null)
40		{
41	0	return null;
42		}
43	0	StringBuffer bf = null;
44	0	try
45		{
46	0	File f = new File(file);
47	0	if (f.exists())
48		{
49	0	bf = new StringBuffer();
50	0	BufferedReader breader = new BufferedReader(new FileReader(f));
51	0	String line = null;
52	0	while (breader.ready() && (line = breader.readLine()) != null)
53		{
54	0	bf.append(line);
55		}
56	0	breader.close();
57		}
58		} catch (Exception e)
59		{
60	0	jalview.bin.Console
61		.errPrintln("Warning: problems reading temp file " + file);
62	0	return null;
63		}
64	0	return bf;
65		}
66
67		}