Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
GeneLociI	28	0	0	-1.0 -	Show methods

Class GeneLociI

Class GeneLociI	Line # 28	Total Statements 0	Complexity 0	TOTAL Coverage -1.0 -

 

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.datamodel;
22
23		import jalview.util.MapList;
24
25		/**
26		* An interface to model one or more contiguous regions on one chromosome
27		*/
		- Uncovered Elements: 0 (0) Complexity: 0 Complexity Density: -
28		public interface GeneLociI
29		{
30		/**
31		* Answers the species identifier
32		*
33		* @return
34		*/
35		String getSpeciesId();
36
37		/**
38		* Answers the reference assembly identifier
39		*
40		* @return
41		*/
42		String getAssemblyId();
43
44		/**
45		* Answers the chromosome identifier e.g. "2", "Y", "II"
46		*
47		* @return
48		*/
49		String getChromosomeId();
50
51		/**
52		* Answers the mapping from sequence to chromosome loci. For a reverse strand
53		* mapping, the chromosomal ranges will have start > end.
54		*
55		* @return
56		*/
57		MapList getMapping();
58		}