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Coverage Report

  1. Project Clover database Tue Nov 4 2025 11:21:43 GMT
  2. Package jalview.appletgui

File FeatureSettings.java

 

Coverage histogram

../../img/srcFileCovDistChart0.png
60% of files have more coverage

Code metrics

100
266
36
2
867
642
95
0.36
7.39
18
2.64

Classes

Class Line # Actions
FeatureSettings 67 234 83
0.00%
FeatureSettings.MyCheckbox 744 32 12
0.00%
 

Contributing tests

No tests hitting this source file were found.

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1    /*
2    * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3    * Copyright (C) $$Year-Rel$$ The Jalview Authors
4    *
5    * This file is part of Jalview.
6    *
7    * Jalview is free software: you can redistribute it and/or
8    * modify it under the terms of the GNU General Public License
9    * as published by the Free Software Foundation, either version 3
10    * of the License, or (at your option) any later version.
11    *
12    * Jalview is distributed in the hope that it will be useful, but
13    * WITHOUT ANY WARRANTY; without even the implied warranty
14    * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15    * PURPOSE. See the GNU General Public License for more details.
16    *
17    * You should have received a copy of the GNU General Public License
18    * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19    * The Jalview Authors are detailed in the 'AUTHORS' file.
20    */
21    package jalview.appletgui;
22   
23    import jalview.api.FeatureColourI;
24    import jalview.api.FeatureSettingsControllerI;
25    import jalview.datamodel.AlignmentI;
26    import jalview.datamodel.SequenceI;
27    import jalview.util.MessageManager;
28    import jalview.viewmodel.seqfeatures.FeatureRendererModel.FeatureSettingsBean;
29   
30    import java.awt.BorderLayout;
31    import java.awt.Button;
32    import java.awt.Checkbox;
33    import java.awt.Color;
34    import java.awt.Component;
35    import java.awt.Dimension;
36    import java.awt.Font;
37    import java.awt.FontMetrics;
38    import java.awt.Frame;
39    import java.awt.Graphics;
40    import java.awt.GridLayout;
41    import java.awt.Image;
42    import java.awt.Label;
43    import java.awt.MenuItem;
44    import java.awt.Panel;
45    import java.awt.PopupMenu;
46    import java.awt.ScrollPane;
47    import java.awt.Scrollbar;
48    import java.awt.event.ActionEvent;
49    import java.awt.event.ActionListener;
50    import java.awt.event.AdjustmentEvent;
51    import java.awt.event.AdjustmentListener;
52    import java.awt.event.InputEvent;
53    import java.awt.event.ItemEvent;
54    import java.awt.event.ItemListener;
55    import java.awt.event.MouseEvent;
56    import java.awt.event.MouseListener;
57    import java.awt.event.MouseMotionListener;
58    import java.awt.event.WindowAdapter;
59    import java.awt.event.WindowEvent;
60    import java.util.ArrayList;
61    import java.util.Arrays;
62    import java.util.HashSet;
63    import java.util.List;
64    import java.util.Map;
65    import java.util.Set;
66   
 
67    public class FeatureSettings extends Panel
68    implements ItemListener, MouseListener, MouseMotionListener,
69    AdjustmentListener, FeatureSettingsControllerI
70    {
71    FeatureRenderer fr;
72   
73    AlignmentPanel ap;
74   
75    AlignViewport av;
76   
77    Frame frame;
78   
79    Panel groupPanel;
80   
81    Panel featurePanel = new Panel();
82   
83    ScrollPane scrollPane;
84   
85    Image linkImage;
86   
87    Scrollbar transparency;
88   
 
89  0 toggle public FeatureSettings(final AlignmentPanel ap)
90    {
91  0 this.ap = ap;
92  0 this.av = ap.av;
93  0 ap.av.featureSettings = this;
94  0 fr = ap.seqPanel.seqCanvas.getFeatureRenderer();
95   
96  0 transparency = new Scrollbar(Scrollbar.HORIZONTAL,
97    100 - (int) (fr.getTransparency() * 100), 1, 1, 100);
98   
99  0 transparency.addAdjustmentListener(this);
100   
101  0 java.net.URL url = getClass().getResource("/images/link.gif");
102  0 if (url != null)
103    {
104  0 linkImage = java.awt.Toolkit.getDefaultToolkit().getImage(url);
105    }
106   
107  0 if (av.isShowSequenceFeatures() || !fr.hasRenderOrder())
108    {
109  0 fr.findAllFeatures(true); // was default - now true to make all visible
110    }
111  0 groupPanel = new Panel();
112   
113  0 discoverAllFeatureData();
114   
115  0 this.setLayout(new BorderLayout());
116  0 scrollPane = new ScrollPane();
117  0 scrollPane.add(featurePanel);
118  0 if (fr.getAllFeatureColours() != null
119    && fr.getAllFeatureColours().size() > 0)
120    {
121  0 add(scrollPane, BorderLayout.CENTER);
122    }
123   
124  0 Button invert = new Button(
125    MessageManager.getString("label.invert_selection"));
126  0 invert.addActionListener(new ActionListener()
127    {
128   
 
129  0 toggle @Override
130    public void actionPerformed(ActionEvent e)
131    {
132  0 invertSelection();
133    }
134    });
135   
136  0 Panel lowerPanel = new Panel(new GridLayout(2, 1, 5, 10));
137  0 lowerPanel.add(invert);
138   
139  0 Panel tPanel = new Panel(new BorderLayout());
140   
141  0 tPanel.add(transparency, BorderLayout.CENTER);
142  0 tPanel.add(new Label("Transparency"), BorderLayout.EAST);
143   
144  0 lowerPanel.add(tPanel, BorderLayout.SOUTH);
145   
146  0 add(lowerPanel, BorderLayout.SOUTH);
147   
148  0 groupPanel.setLayout(
149    new GridLayout((fr.getFeatureGroupsSize()) / 4 + 1, 4)); // JBPNote
150    // - this
151    // was
152    // scaled
153    // on
154    // number
155    // of
156    // visible
157    // groups.
158    // seems
159    // broken
160  0 groupPanel.validate();
161   
162  0 add(groupPanel, BorderLayout.NORTH);
163   
164  0 frame = new Frame();
165  0 frame.add(this);
166  0 final FeatureSettings me = this;
167  0 frame.addWindowListener(new WindowAdapter()
168    {
 
169  0 toggle @Override
170    public void windowClosing(WindowEvent e)
171    {
172  0 if (me.av.featureSettings == me)
173    {
174  0 me.av.featureSettings = null;
175  0 me.ap = null;
176  0 me.av = null;
177    }
178    }
179    });
180  0 int height = featurePanel.getComponentCount() * 50 + 60;
181   
182  0 height = Math.max(200, height);
183  0 height = Math.min(400, height);
184  0 int width = 300;
185  0 jalview.bin.JalviewLite.addFrame(frame,
186    MessageManager.getString("label.sequence_feature_settings"),
187    width, height);
188    }
189   
 
190  0 toggle @Override
191    public void paint(Graphics g)
192    {
193  0 g.setColor(Color.black);
194  0 g.drawString(MessageManager.getString(
195    "label.no_features_added_to_this_alignment"), 10, 20);
196  0 g.drawString(MessageManager.getString(
197    "label.features_can_be_added_from_searches_1"), 10, 40);
198  0 g.drawString(MessageManager.getString(
199    "label.features_can_be_added_from_searches_2"), 10, 60);
200    }
201   
 
202  0 toggle protected void popupSort(final MyCheckbox check,
203    final Map<String, float[][]> minmax, int x, int y)
204    {
205  0 final String type = check.type;
206  0 final FeatureColourI typeCol = fr.getFeatureStyle(type);
207  0 PopupMenu men = new PopupMenu(MessageManager
208    .formatMessage("label.settings_for_type", new String[]
209    { type }));
210  0 java.awt.MenuItem scr = new MenuItem(
211    MessageManager.getString("label.sort_by_score"));
212  0 men.add(scr);
213  0 final FeatureSettings me = this;
214  0 scr.addActionListener(new ActionListener()
215    {
216   
 
217  0 toggle @Override
218    public void actionPerformed(ActionEvent e)
219    {
220  0 me.ap.alignFrame.avc
221    .sortAlignmentByFeatureScore(Arrays.asList(new String[]
222    { type }));
223    }
224   
225    });
226  0 MenuItem dens = new MenuItem(
227    MessageManager.getString("label.sort_by_density"));
228  0 dens.addActionListener(new ActionListener()
229    {
230   
 
231  0 toggle @Override
232    public void actionPerformed(ActionEvent e)
233    {
234  0 me.ap.alignFrame.avc
235    .sortAlignmentByFeatureDensity(Arrays.asList(new String[]
236    { type }));
237    }
238   
239    });
240  0 men.add(dens);
241   
242  0 if (minmax != null)
243    {
244  0 final float[][] typeMinMax = minmax.get(type);
245    /*
246    * final java.awt.CheckboxMenuItem chb = new
247    * java.awt.CheckboxMenuItem("Vary Height"); // this is broken at the
248    * moment chb.setState(minmax.get(type) != null);
249    * chb.addActionListener(new ActionListener() {
250    *
251    * public void actionPerformed(ActionEvent e) {
252    * chb.setState(chb.getState()); if (chb.getState()) { minmax.put(type,
253    * null); } else { minmax.put(type, typeMinMax); } }
254    *
255    * }); men.add(chb);
256    */
257  0 if (typeMinMax != null && typeMinMax[0] != null)
258    {
259    // graduated colourschemes for those where minmax exists for the
260    // positional features
261  0 MenuItem mxcol = new MenuItem(
262  0 (typeCol.isSimpleColour()) ? "Graduated Colour"
263    : "Single Colour");
264  0 men.add(mxcol);
265  0 mxcol.addActionListener(new ActionListener()
266    {
267   
 
268  0 toggle @Override
269    public void actionPerformed(ActionEvent e)
270    {
271  0 if (typeCol.isSimpleColour())
272    {
273  0 new FeatureColourChooser(me, type);
274    // write back the current colour object to update the table
275  0 check.updateColor(fr.getFeatureStyle(type));
276    }
277    else
278    {
279  0 new UserDefinedColours(me, check.type, typeCol);
280    }
281    }
282   
283    });
284    }
285    }
286   
287  0 MenuItem selectContaining = new MenuItem(
288    MessageManager.getString("label.select_columns_containing"));
289  0 selectContaining.addActionListener(new ActionListener()
290    {
 
291  0 toggle @Override
292    public void actionPerformed(ActionEvent e)
293    {
294  0 me.ap.alignFrame.avc.markColumnsContainingFeatures(false, false,
295    false, type);
296    }
297    });
298  0 men.add(selectContaining);
299   
300  0 MenuItem selectNotContaining = new MenuItem(MessageManager
301    .getString("label.select_columns_not_containing"));
302  0 selectNotContaining.addActionListener(new ActionListener()
303    {
 
304  0 toggle @Override
305    public void actionPerformed(ActionEvent e)
306    {
307  0 me.ap.alignFrame.avc.markColumnsContainingFeatures(true, false,
308    false, type);
309    }
310    });
311  0 men.add(selectNotContaining);
312   
313  0 MenuItem hideContaining = new MenuItem(
314    MessageManager.getString("label.hide_columns_containing"));
315  0 hideContaining.addActionListener(new ActionListener()
316    {
 
317  0 toggle @Override
318    public void actionPerformed(ActionEvent e)
319    {
320  0 hideFeatureColumns(type, true);
321    }
322    });
323  0 men.add(hideContaining);
324   
325  0 MenuItem hideNotContaining = new MenuItem(
326    MessageManager.getString("label.hide_columns_not_containing"));
327  0 hideNotContaining.addActionListener(new ActionListener()
328    {
 
329  0 toggle @Override
330    public void actionPerformed(ActionEvent e)
331    {
332  0 hideFeatureColumns(type, false);
333    }
334    });
335  0 men.add(hideNotContaining);
336   
337  0 this.featurePanel.add(men);
338  0 men.show(this.featurePanel, x, y);
339    }
340   
 
341  0 toggle @Override
342    public void discoverAllFeatureData()
343    {
344  0 if (fr.getAllFeatureColours() != null
345    && fr.getAllFeatureColours().size() > 0)
346    {
347    // rebuildGroups();
348   
349    }
350  0 resetTable(false);
351    }
352   
353    /**
354    * Answers the visibility of the given group, and adds a checkbox for it if
355    * there is not one already
356    */
 
357  0 toggle public boolean checkGroupState(String group)
358    {
359  0 boolean visible = fr.checkGroupVisibility(group, true);
360   
361    /*
362    * is there already a checkbox for this group?
363    */
364  0 for (int g = 0; g < groupPanel.getComponentCount(); g++)
365    {
366  0 if (((Checkbox) groupPanel.getComponent(g)).getLabel().equals(group))
367    {
368  0 ((Checkbox) groupPanel.getComponent(g)).setState(visible);
369  0 return visible;
370    }
371    }
372   
373    /*
374    * add a new checkbox
375    */
376  0 Checkbox check = new MyCheckbox(group, visible, false);
377  0 check.addMouseListener(this);
378  0 check.setFont(new Font("Serif", Font.BOLD, 12));
379  0 check.addItemListener(groupItemListener);
380  0 groupPanel.add(check);
381   
382  0 groupPanel.validate();
383  0 return visible;
384    }
385   
386    // This routine adds and removes checkboxes depending on
387    // Group selection states
 
388  0 toggle void resetTable(boolean groupsChanged)
389    {
390  0 List<String> displayableTypes = new ArrayList<>();
391  0 Set<String> foundGroups = new HashSet<>();
392   
393  0 AlignmentI alignment = av.getAlignment();
394   
395  0 for (int i = 0; i < alignment.getHeight(); i++)
396    {
397  0 SequenceI seq = alignment.getSequenceAt(i);
398   
399    /*
400    * get the sequence's groups for positional features
401    * and keep track of which groups are visible
402    */
403  0 Set<String> groups = seq.getFeatures().getFeatureGroups(true);
404  0 Set<String> visibleGroups = new HashSet<>();
405  0 for (String group : groups)
406    {
407    // if (group == null || fr.checkGroupVisibility(group, true))
408  0 if (group == null || checkGroupState(group))
409    {
410  0 visibleGroups.add(group);
411    }
412    }
413  0 foundGroups.addAll(groups);
414   
415    /*
416    * get distinct feature types for visible groups
417    * record distinct visible types
418    */
419  0 Set<String> types = seq.getFeatures().getFeatureTypesForGroups(true,
420    visibleGroups.toArray(new String[visibleGroups.size()]));
421  0 displayableTypes.addAll(types);
422    }
423   
424    /*
425    * remove any checkboxes for groups not present
426    */
427  0 pruneGroups(foundGroups);
428   
429  0 Component[] comps;
430  0 int cSize = featurePanel.getComponentCount();
431  0 MyCheckbox check;
432    // This will remove any checkboxes which shouldn't be
433    // visible
434  0 for (int i = 0; i < cSize; i++)
435    {
436  0 comps = featurePanel.getComponents();
437  0 check = (MyCheckbox) comps[i];
438  0 if (!displayableTypes.contains(check.type))
439    {
440  0 featurePanel.remove(i);
441  0 cSize--;
442  0 i--;
443    }
444    }
445   
446  0 if (fr.getRenderOrder() != null)
447    {
448    // First add the checks in the previous render order,
449    // in case the window has been closed and reopened
450  0 List<String> rol = fr.getRenderOrder();
451  0 for (int ro = rol.size() - 1; ro > -1; ro--)
452    {
453  0 String item = rol.get(ro);
454   
455  0 if (!displayableTypes.contains(item))
456    {
457  0 continue;
458    }
459   
460  0 displayableTypes.remove(item);
461   
462  0 addCheck(false, item);
463    }
464    }
465   
466    /*
467    * now add checkboxes which should be visible,
468    * if they have not already been added
469    */
470  0 for (String type : displayableTypes)
471    {
472  0 addCheck(groupsChanged, type);
473    }
474   
475  0 featurePanel.setLayout(
476    new GridLayout(featurePanel.getComponentCount(), 1, 10, 5));
477  0 featurePanel.validate();
478   
479  0 if (scrollPane != null)
480    {
481  0 scrollPane.validate();
482    }
483   
484  0 itemStateChanged(null);
485    }
486   
487    /**
488    * Remove from the groups panel any checkboxes for groups that are not in the
489    * foundGroups set. This enables removing a group from the display when the
490    * last feature in that group is deleted.
491    *
492    * @param foundGroups
493    */
 
494  0 toggle protected void pruneGroups(Set<String> foundGroups)
495    {
496  0 for (int g = 0; g < groupPanel.getComponentCount(); g++)
497    {
498  0 Checkbox checkbox = (Checkbox) groupPanel.getComponent(g);
499  0 if (!foundGroups.contains(checkbox.getLabel()))
500    {
501  0 groupPanel.remove(checkbox);
502    }
503    }
504    }
505   
506    /**
507    * update the checklist of feature types with the given type
508    *
509    * @param groupsChanged
510    * true means if the type is not in the display list then it will be
511    * added and displayed
512    * @param type
513    * feature type to be checked for in the list.
514    */
 
515  0 toggle void addCheck(boolean groupsChanged, String type)
516    {
517  0 boolean addCheck;
518  0 Component[] comps = featurePanel.getComponents();
519  0 MyCheckbox check;
520  0 addCheck = true;
521  0 for (int i = 0; i < featurePanel.getComponentCount(); i++)
522    {
523  0 check = (MyCheckbox) comps[i];
524  0 if (check.type.equals(type))
525    {
526  0 addCheck = false;
527  0 break;
528    }
529    }
530   
531  0 if (addCheck)
532    {
533  0 boolean selected = false;
534  0 if (groupsChanged || av.getFeaturesDisplayed().isVisible(type))
535    {
536  0 selected = true;
537    }
538   
539  0 check = new MyCheckbox(type, selected, false,
540    fr.getFeatureStyle(type));
541   
542  0 check.addMouseListener(this);
543  0 check.addMouseMotionListener(this);
544  0 check.addItemListener(this);
545  0 if (groupsChanged)
546    {
547    // add at beginning of stack.
548  0 featurePanel.add(check, 0);
549    }
550    else
551    {
552    // add at end of stack.
553  0 featurePanel.add(check);
554    }
555    }
556    }
557   
 
558  0 toggle protected void invertSelection()
559    {
560  0 for (int i = 0; i < featurePanel.getComponentCount(); i++)
561    {
562  0 Checkbox check = (Checkbox) featurePanel.getComponent(i);
563  0 check.setState(!check.getState());
564    }
565  0 selectionChanged(true);
566    }
567   
568    private ItemListener groupItemListener = new ItemListener()
569    {
 
570  0 toggle @Override
571    public void itemStateChanged(ItemEvent evt)
572    {
573  0 Checkbox source = (Checkbox) evt.getSource();
574  0 fr.setGroupVisibility(source.getLabel(), source.getState());
575  0 ap.seqPanel.seqCanvas.repaint();
576  0 if (ap.overviewPanel != null)
577    {
578  0 ap.overviewPanel.updateOverviewImage();
579    }
580  0 resetTable(true);
581  0 return;
582    };
583    };
584   
 
585  0 toggle @Override
586    public void itemStateChanged(ItemEvent evt)
587    {
588  0 selectionChanged(true);
589    }
590   
 
591  0 toggle void selectionChanged(boolean updateOverview)
592    {
593  0 Component[] comps = featurePanel.getComponents();
594  0 int cSize = comps.length;
595  0 FeatureSettingsBean[] rowData = new FeatureSettingsBean[cSize];
596  0 int i = 0;
597  0 for (Component comp : comps)
598    {
599  0 MyCheckbox check = (MyCheckbox) comp;
600    // feature filter set to null as not (yet) offered in applet
601  0 FeatureColourI colour = fr.getFeatureStyle(check.type);
602  0 rowData[i] = new FeatureSettingsBean(check.type, colour, null,
603    check.getState());
604  0 i++;
605    }
606   
607  0 fr.setFeaturePriority(rowData);
608   
609  0 ap.paintAlignment(updateOverview, updateOverview);
610    }
611   
612    MyCheckbox selectedCheck;
613   
614    boolean dragging = false;
615   
 
616  0 toggle @Override
617    public void mouseDragged(MouseEvent evt)
618    {
619  0 if (((Component) evt.getSource()).getParent() != featurePanel)
620    {
621  0 return;
622    }
623  0 dragging = true;
624    }
625   
 
626  0 toggle @Override
627    public void mouseReleased(MouseEvent evt)
628    {
629  0 if (((Component) evt.getSource()).getParent() != featurePanel)
630    {
631  0 return;
632    }
633   
634  0 Component comp = null;
635  0 Checkbox target = null;
636   
637  0 int height = evt.getY() + evt.getComponent().getLocation().y;
638   
639  0 if (height > featurePanel.getSize().height)
640    {
641   
642  0 comp = featurePanel
643    .getComponent(featurePanel.getComponentCount() - 1);
644    }
645  0 else if (height < 0)
646    {
647  0 comp = featurePanel.getComponent(0);
648    }
649    else
650    {
651  0 comp = featurePanel.getComponentAt(evt.getX(),
652    evt.getY() + evt.getComponent().getLocation().y);
653    }
654   
655  0 if (comp != null && comp instanceof Checkbox)
656    {
657  0 target = (Checkbox) comp;
658    }
659   
660  0 if (selectedCheck != null && target != null && selectedCheck != target)
661    {
662  0 int targetIndex = -1;
663  0 for (int i = 0; i < featurePanel.getComponentCount(); i++)
664    {
665  0 if (target == featurePanel.getComponent(i))
666    {
667  0 targetIndex = i;
668  0 break;
669    }
670    }
671   
672  0 featurePanel.remove(selectedCheck);
673  0 featurePanel.add(selectedCheck, targetIndex);
674  0 featurePanel.validate();
675  0 itemStateChanged(null);
676    }
677    }
678   
 
679  0 toggle public void setUserColour(String feature, FeatureColourI originalColour)
680    {
681  0 fr.setColour(feature, originalColour);
682  0 refreshTable();
683    }
684   
 
685  0 toggle public void refreshTable()
686    {
687  0 featurePanel.removeAll();
688  0 resetTable(false);
689  0 ap.paintAlignment(true, true);
690    }
691   
 
692  0 toggle @Override
693    public void mouseEntered(MouseEvent evt)
694    {
695    }
696   
 
697  0 toggle @Override
698    public void mouseExited(MouseEvent evt)
699    {
700    }
701   
 
702  0 toggle @Override
703    public void mouseClicked(MouseEvent evt)
704    {
705  0 MyCheckbox check = (MyCheckbox) evt.getSource();
706  0 if ((evt.getModifiersEx() & InputEvent.BUTTON3_DOWN_MASK) != 0)
707    {
708  0 this.popupSort(check, fr.getMinMax(), evt.getX(), evt.getY());
709    }
710   
711  0 if (check.getParent() != featurePanel)
712    {
713  0 return;
714    }
715   
716  0 if (evt.getClickCount() > 1)
717    {
718  0 FeatureColourI fcol = fr.getFeatureStyle(check.type);
719  0 if (fcol.isSimpleColour())
720    {
721  0 new UserDefinedColours(this, check.type, fcol.getColour());
722    }
723    else
724    {
725  0 new FeatureColourChooser(this, check.type);
726    // write back the current colour object to update the table
727  0 check.updateColor(fr.getFeatureStyle(check.type));
728    }
729    }
730    }
731   
 
732  0 toggle @Override
733    public void mouseMoved(MouseEvent evt)
734    {
735    }
736   
 
737  0 toggle @Override
738    public void adjustmentValueChanged(AdjustmentEvent evt)
739    {
740  0 fr.setTransparency((100 - transparency.getValue()) / 100f);
741  0 ap.paintAlignment(true, true);
742    }
743   
 
744    class MyCheckbox extends Checkbox
745    {
746    public String type;
747   
748    public int stringWidth;
749   
750    boolean hasLink;
751   
752    FeatureColourI col;
753   
 
754  0 toggle public void updateColor(FeatureColourI newcol)
755    {
756  0 col = newcol;
757  0 if (col.isSimpleColour())
758    {
759  0 setBackground(col.getColour());
760    }
761    else
762    {
763  0 String vlabel = type;
764  0 if (col.isAboveThreshold())
765    {
766  0 vlabel += " (>)";
767    }
768  0 else if (col.isBelowThreshold())
769    {
770  0 vlabel += " (<)";
771    }
772  0 if (col.isColourByLabel())
773    {
774  0 setBackground(Color.white);
775  0 vlabel += " (by Label)";
776    }
777    else
778    {
779  0 setBackground(col.getMinColour());
780    }
781  0 this.setLabel(vlabel);
782    }
783  0 repaint();
784    }
785   
 
786  0 toggle public MyCheckbox(String label, boolean checked, boolean haslink)
787    {
788  0 super(label, checked);
789  0 type = label;
790  0 FontMetrics fm = av.nullFrame.getFontMetrics(av.nullFrame.getFont());
791  0 stringWidth = fm.stringWidth(label);
792  0 this.hasLink = haslink;
793    }
794   
 
795  0 toggle public MyCheckbox(String type, boolean selected, boolean b,
796    FeatureColourI featureStyle)
797    {
798  0 this(type, selected, b);
799  0 updateColor(featureStyle);
800    }
801   
 
802  0 toggle @Override
803    public void paint(Graphics g)
804    {
805  0 Dimension d = getSize();
806  0 if (col != null)
807    {
808  0 if (col.isColourByLabel())
809    {
810  0 g.setColor(Color.white);
811  0 g.fillRect(d.width / 2, 0, d.width / 2, d.height);
812    /*
813    * g.setColor(Color.black); Font f=g.getFont().deriveFont(9);
814    * g.setFont(f);
815    *
816    * // g.setFont(g.getFont().deriveFont( //
817    * AffineTransform.getScaleInstance( //
818    * width/g.getFontMetrics().stringWidth("Label"), //
819    * height/g.getFontMetrics().getHeight()))); g.drawString("Label",
820    * width/2, 0);
821    */
822   
823    }
824  0 else if (col.isGraduatedColour())
825    {
826  0 Color maxCol = col.getMaxColour();
827  0 g.setColor(maxCol);
828  0 g.fillRect(d.width / 2, 0, d.width / 2, d.height);
829   
830    }
831    }
832   
833  0 if (hasLink)
834    {
835  0 g.drawImage(linkImage, stringWidth + 25,
836    (getSize().height - linkImage.getHeight(this)) / 2, this);
837    }
838    }
839    }
840   
841    /**
842    * Hide columns containing (or not containing) a given feature type
843    *
844    * @param type
845    * @param columnsContaining
846    */
 
847  0 toggle void hideFeatureColumns(final String type, boolean columnsContaining)
848    {
849  0 if (ap.alignFrame.avc.markColumnsContainingFeatures(columnsContaining,
850    false, false, type))
851    {
852  0 if (ap.alignFrame.avc.markColumnsContainingFeatures(
853    !columnsContaining, false, false, type))
854    {
855  0 ap.alignFrame.viewport.hideSelectedColumns();
856    }
857    }
858    }
859   
 
860  0 toggle @Override
861    public void mousePressed(MouseEvent e)
862    {
863    // TODO Auto-generated method stub
864   
865    }
866   
867    }
  • Report generated by OpenClover v 4.4.1 on Tue Nov 4 2025 11:32:25 GMT using coverage data from Tue Nov 4 2025 11:32:11 GMT.
  • OpenClover is free and open-source software.