Gradle Develop Build

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JIRA Issues

This page lists the JIRA issues that have been linked to builds related to this plan, ordered by last built. This includes issues specified in commit messages, labels or comments for builds, as well as issues manually linked to builds.

JIRA Issues (18 issues)
Type Key Summary Status Assignee Fix versions Related Builds Last Built
Bug JAL-4635 MultiHarmony service doesn't submit - reports redirect due to http->https Resolved James Procter 2.11.5.1 6 related builds Last built: 3 days ago
Unknown Issue Type JA-4601 Could not obtain issue details from JIRA Last built: 3 days ago
Task JAL-3084 Review / adapt Preferences panel for JalviewJS Closed Mungo Carstairs 2.11.1_js, 2.11.2.0, 2.11.5.1 9 related builds Last built: 3 days ago
New Feature JAL-4243 bio.tools record accompanying Jalview source code Closed Ben Soares 2.11.3.0, 2.11.3.1, 2.11.3.2, 2.11.3.3, 2.11.4.0, 2.11.4.1, 2.11.5.1 4 related builds Last built: 3 days ago
Improvement JAL-4521 allow trees/PCA for secondary structures when just one sequence is shown in alignment Being documented James Procter 2.11.5.1 4 related builds Last built: 3 days ago
Task JAL-4581 Secondary Structure Provider Colours for 2.11.5.1 - JalviewJS Ready for testing James Procter 2.12.0, 2.11.5.2 7 related builds Last built: 3 days ago
Bug JAL-4594 Secondary structure consensus appears to overlap with other annotation Resolved James Procter 2.11.5.0, 2.12.0, 2.11.5.1 8 related builds Last built: 3 days ago
Bug JAL-4601 Manual import of JPred annotation data does not trigger display of secondary structure consensus Closed James Procter 2.12.0, 2.11.5.1 5 related builds Last built: 3 days ago
Improvement JAL-4602 Hide the 'All' secondary structure consensus annotation when just one type is available Resolved James Procter 2.12.0, 2.11.5.1 3 related builds Last built: 3 days ago
Bug JAL-4603 Export images of alignments missing part of sequence Resolved James Procter 2.12.0, 2.11.5.1 13 related builds Last built: 3 days ago
Bug JAL-4604 Jalview 2.11.5.0 not launching for second or subsequent times from 2.11.4.0 installation on Windows or Linux Ready for testing James Procter 2.11.5.1 6 related builds Last built: 3 days ago
Bug JAL-4606 Jmol doesn't interpret path correctly on university managed Windows desktop Resolved James Procter 2.11.5.1 3 related builds Last built: 3 days ago
Bug JAL-4607 install4j Windows installer wizard in dark mode needs background colour adjustment Ready for testing Ben Soares 2.11.5.1 3 related builds Last built: 3 days ago
Task JAL-4617 Release 2.11.5.1 Open James Procter 2.11.5.1 6 related builds Last built: 3 days ago
Bug JAL-4626 EMBL-EBI AlphaFold PAEs are not being imported Closed James Procter 2.11.5.1 4 related builds Last built: 3 days ago
Bug JAL-4633 Jalview shows nodes in secondary structure annotation tree as unlinked In Progress James Procter 2.12.0, 2.11.5.1 9 related builds Last built: 3 days ago
Task JAL-4634 recode around SwingJS transpile of nested Array.stream ops with closure doesn't work Being documented James Procter 2.11.5.1 9 related builds Last built: 3 days ago
New Feature JAL-835 support for 'insertion positions' in a3m files [ was a2m - in UCSC speak) Ready for testing James Procter 2.11.5.1 5 related builds Last built: 3 days ago
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