Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
JalviewFileViewTest	35	43	3	1.0100%	Show methods

Class JalviewFileViewTest

Class JalviewFileViewTest	Line # 35	Total Statements 43	Complexity 3	TOTAL Coverage 1.0100%
testGetImageIcon() : void   testGetImageIcon() : void	3737	12.012	1.01	1.0 1.0100%
testGetExtension() : void   testGetExtension() : void	5959	4.04	1.01	1.0 1.0100%
testGetTypeDescription() : void   testGetTypeDescription() : void	7171	27.027	1.01	1.0 1.0100%

 

Contributing tests

Contributing tests

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	Test contribution	Test	Result	Actions
	0.6086956	jalview.io.JalviewFileViewTest.testGetTypeDescriptionjalview.io.JalviewFileViewTest.testGetTypeDescription	1PASS
	0.2826087	jalview.io.JalviewFileViewTest.testGetImageIconjalview.io.JalviewFileViewTest.testGetImageIcon	1PASS
	0.10869565	jalview.io.JalviewFileViewTest.testGetExtensionjalview.io.JalviewFileViewTest.testGetExtension	1PASS

 

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.io;
22
23		import static org.testng.Assert.assertEquals;
24		import static org.testng.Assert.assertNotNull;
25		import static org.testng.Assert.assertNotSame;
26		import static org.testng.Assert.assertNull;
27		import static org.testng.Assert.assertSame;
28
29		import java.io.File;
30
31		import javax.swing.ImageIcon;
32
33		import org.testng.annotations.Test;
34
		100% Uncovered Elements: 0 (46) Complexity: 3 Complexity Density: 0.07
35		public class JalviewFileViewTest
36		{
		100% Uncovered Elements: 0 (12) Complexity: 1 Complexity Density: 0.08 1PASS
37	1	@Test(groups = "Functional")...
38		public void testGetImageIcon()
39		{
40	1	JalviewFileView jfv = new JalviewFileView();
41	1	ImageIcon icon1 = jfv.getImageIcon("/images/file.png");
42	1	ImageIcon icon2 = jfv.getImageIcon("/images/file.png");
43	1	ImageIcon icon3 = jfv.getImageIcon("/images/dna.png");
44	1	ImageIcon icon4 = jfv.getImageIcon("/images/dna.png");
45
46		/*
47		* verify a single image object is served per file path
48		*/
49	1	assertNotNull(icon1);
50	1	assertSame(icon1, icon2);
51	1	assertNotNull(icon3);
52	1	assertSame(icon3, icon4);
53	1	assertNotSame(icon1, icon3);
54
55	1	assertNull(jfv.getImageIcon("/images/nosuchfile.png"));
56	1	assertNull(jfv.getImageIcon("images/file.png"));
57		}
58
		100% Uncovered Elements: 0 (4) Complexity: 1 Complexity Density: 0.25 1PASS
59	1	@Test(groups = "Functional")...
60		public void testGetExtension()
61		{
62	1	assertEquals(JalviewFileView.getExtension(new File("text.txt")), "txt");
63	1	assertEquals(JalviewFileView.getExtension(
64		new File("/a/longer/file/path/text.png.TXT")), "txt");
65	1	assertNull(JalviewFileView
66		.getExtension(new File("/a/longer/file/path/text.")));
67	1	assertNull(JalviewFileView
68		.getExtension(new File("/a/longer/file/path/text")));
69		}
70
		100% Uncovered Elements: 0 (27) Complexity: 1 Complexity Density: 0.04 1PASS
71	1	@Test(groups = "Functional")...
72		public void testGetTypeDescription()
73		{
74	1	JalviewFileView jfw = new JalviewFileView();
75	1	assertEquals(jfw.getTypeDescription(new File("uniref50.fa")),
76		"Fasta file");
77	1	assertEquals(jfw.getTypeDescription(new File("uniref50.fasta")),
78		"Fasta file");
79	1	assertEquals(jfw.getTypeDescription(new File("uniref50.MFA")),
80		"Fasta file");
81	1	assertEquals(jfw.getTypeDescription(new File("uniref50.fastQ")),
82		"Fasta file");
83	1	assertEquals(jfw.getTypeDescription(new File("uniref50.pfam")),
84		"PFAM file");
85	1	assertEquals(jfw.getTypeDescription(new File("uniref50.stk")),
86		"Stockholm file");
87	1	assertEquals(jfw.getTypeDescription(new File("uniref50.sto")),
88		"Stockholm file");
89	1	assertEquals(jfw.getTypeDescription(new File("uniref50.pir")),
90		"PIR file");
91	1	assertEquals(jfw.getTypeDescription(new File("uniref50.blc")),
92		"BLC file");
93	1	assertEquals(jfw.getTypeDescription(new File("uniref50.amsa")),
94		"AMSA file");
95	1	assertEquals(jfw.getTypeDescription(new File("uniref50.html")),
96		"HTML file");
97	1	assertNull(jfw.getTypeDescription(new File("uniref50.htm")));
98	1	assertEquals(jfw.getTypeDescription(new File("uniref50.xml")),
99		"RNAML file");
100	1	assertEquals(jfw.getTypeDescription(new File("uniref50.rnaml")),
101		"RNAML file");
102	1	assertEquals(jfw.getTypeDescription(new File("uniref50.json")),
103		"JSON file");
104	1	assertEquals(jfw.getTypeDescription(new File("uniref50.pileup")),
105		"PileUp file");
106	1	assertEquals(jfw.getTypeDescription(new File("uniref50.msf")),
107		"MSF file");
108	1	assertEquals(jfw.getTypeDescription(new File("uniref50.aln")),
109		"Clustal file");
110	1	assertEquals(jfw.getTypeDescription(new File("uniref50.phy")),
111		"PHYLIP file");
112	1	assertEquals(jfw.getTypeDescription(new File("uniref50.gff2")),
113		"GFF or Jalview features file");
114	1	assertEquals(jfw.getTypeDescription(new File("uniref50.gff3")),
115		"GFF or Jalview features file");
116	1	assertEquals(jfw.getTypeDescription(new File("uniref50.pdb")),
117		"PDB file");
118	1	assertEquals(jfw.getTypeDescription(new File("uniref50.ent")),
119		"PDB file");
120	1	assertEquals(jfw.getTypeDescription(new File("uniref50.cif")),
121		"mmCIF file");
122	1	assertEquals(jfw.getTypeDescription(new File("uniref50.jvp")),
123		"Jalview file");
124	1	assertEquals(jfw.getTypeDescription(new File("uniref50.jar")),
125		"Jalview file (old)");
126		}
127		}