Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
PairwiseScoreModelI	27	0	0	-1.0 -	Show methods

Class PairwiseScoreModelI

Class PairwiseScoreModelI	Line # 27	Total Statements 0	Complexity 0	TOTAL Coverage -1.0 -

 

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.api.analysis;
22
23		/**
24		* An interface that describes classes that can compute similarity (aka
25		* substitution) scores for pairs of residues
26		*/
		- Uncovered Elements: 0 (0) Complexity: 0 Complexity Density: -
27		public interface PairwiseScoreModelI
28		{
29		/**
30		* Answers a similarity score between two sequence characters (for
31		* substitution of the first by the second). Typically the highest scores are
32		* for identity, and the lowest for substitution of a residue by one with very
33		* different properties.
34		*
35		* @param c
36		* @param d
37		* @return
38		*/
39		abstract public float getPairwiseScore(char c, char d);
40		// TODO make this static when Java 8
41
42		}