Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
JalviewChimeraBindingModel	34	7	4	0.00%	Show methods

Class JalviewChimeraBindingModel

Class JalviewChimeraBindingModel	Line # 34	Total Statements 7	Complexity 4	TOTAL Coverage 0.00%
JalviewChimeraBindingModel(ChimeraViewFrame,StructureSelectionManager,PDBEntry[],SequenceI[][],DataSourceType)   JalviewChimeraBindingModel(ChimeraViewFrame,StructureSelectionManager,PDBEntry[],SequenceI[][],DataSourceType)	3636	2.02	1.01	0.0 0.00%
getSequenceRenderer(AlignmentViewPanel) : jalview.api.SequenceRenderer   getSequenceRenderer(AlignmentViewPanel) : jalview.api.SequenceRenderer	4444	1.01	1.01	0.0 0.00%
run() : void   run() : void	5656	3.03	1.01	0.0 0.00%
refreshGUI() : void   refreshGUI() : void	5151	1.01	1.01	0.0 0.00%

 

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.gui;
22
23		import javax.swing.JComponent;
24		import javax.swing.SwingUtilities;
25
26		import jalview.api.AlignmentViewPanel;
27		import jalview.api.structures.JalviewStructureDisplayI;
28		import jalview.datamodel.PDBEntry;
29		import jalview.datamodel.SequenceI;
30		import jalview.ext.rbvi.chimera.JalviewChimeraBinding;
31		import jalview.io.DataSourceType;
32		import jalview.structure.StructureSelectionManager;
33
		0% Uncovered Elements: 11 (11) Complexity: 4 Complexity Density: 0.57
34		public class JalviewChimeraBindingModel extends JalviewChimeraBinding
35		{
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
36	0	public JalviewChimeraBindingModel(ChimeraViewFrame chimeraViewFrame,...
37		StructureSelectionManager ssm, PDBEntry[] pdbentry,
38		SequenceI[][] sequenceIs, DataSourceType protocol)
39		{
40	0	super(ssm, pdbentry, sequenceIs, protocol);
41	0	setViewer(chimeraViewFrame);
42		}
43
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
44	0	@Override...
45		public jalview.api.SequenceRenderer getSequenceRenderer(
46		AlignmentViewPanel alignment)
47		{
48	0	return new SequenceRenderer(((AlignmentPanel) alignment).av);
49		}
50
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
51	0	@Override...
52		public void refreshGUI()
53		{
54	0	SwingUtilities.invokeLater(new Runnable()
55		{
		0% Uncovered Elements: 3 (3) Complexity: 1 Complexity Density: 0.33
56	0	@Override...
57		public void run()
58		{
59	0	JalviewStructureDisplayI theViewer = getViewer();
60	0	theViewer.updateTitleAndMenus();
61	0	((JComponent) theViewer).revalidate();
62		}
63		});
64		}
65		}