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package jalview.viewmodel; |
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import java.awt.Graphics; |
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import jalview.api.AlignmentColsCollectionI; |
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import jalview.api.AlignmentRowsCollectionI; |
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import jalview.datamodel.AlignmentI; |
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import jalview.datamodel.HiddenColumns; |
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import jalview.datamodel.HiddenSequences; |
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| 96.9% |
Uncovered Elements: 2 (65) |
Complexity: 22 |
Complexity Density: 0.59 |
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public abstract class OverviewDimensions |
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{ |
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protected static final int MAX_WIDTH = 400; |
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protected static final int MIN_WIDTH = 120; |
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protected static final int MIN_SEQ_HEIGHT = 40; |
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protected static final int MAX_SEQ_HEIGHT = 300; |
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private static final int DEFAULT_GRAPH_HEIGHT = 20; |
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protected int width; |
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protected int sequencesHeight; |
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protected int graphHeight = DEFAULT_GRAPH_HEIGHT; |
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protected int boxX = -1; |
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protected int boxY = -1; |
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protected int boxWidth = -1; |
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protected int boxHeight = -1; |
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protected int alwidth; |
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protected int alheight; |
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protected float widthRatio; |
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protected float heightRatio; |
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@param |
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@param |
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| 100% |
Uncovered Elements: 0 (20) |
Complexity: 5 |
Complexity Density: 0.42 |
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public OverviewDimensions(ViewportRanges ranges,... |
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boolean showAnnotationPanel) |
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{ |
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float initialScale = (float) ranges.getAbsoluteAlignmentWidth() |
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/ (float) ranges.getAbsoluteAlignmentHeight(); |
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if (!showAnnotationPanel) |
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{ |
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graphHeight = 0; |
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} |
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if (ranges.getAbsoluteAlignmentWidth() > ranges |
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.getAbsoluteAlignmentHeight()) |
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{ |
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width = MAX_WIDTH; |
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sequencesHeight = Math.round(MAX_WIDTH / initialScale); |
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if (sequencesHeight < MIN_SEQ_HEIGHT) |
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{ |
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sequencesHeight = MIN_SEQ_HEIGHT; |
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} |
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} |
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else |
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{ |
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width = Math.round(MAX_WIDTH * initialScale); |
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sequencesHeight = MAX_SEQ_HEIGHT; |
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if (width < MIN_WIDTH) |
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{ |
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width = MIN_WIDTH; |
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} |
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} |
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} |
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@param |
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| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
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public void drawBox(Graphics g)... |
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{ |
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g.drawRect(boxX, boxY, boxWidth, boxHeight); |
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g.drawRect(boxX + 1, boxY + 1, boxWidth - 2, boxHeight - 2); |
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} |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
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public int getBoxX()... |
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{ |
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return boxX; |
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} |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
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public int getBoxY()... |
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{ |
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return boxY; |
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} |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
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public int getBoxWidth()... |
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{ |
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return boxWidth; |
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} |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
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public int getBoxHeight()... |
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{ |
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return boxHeight; |
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} |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
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public int getWidth()... |
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{ |
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return width; |
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} |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
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1191 |
public int getHeight()... |
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{ |
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return sequencesHeight + graphHeight; |
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} |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
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public int getSequencesHeight()... |
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{ |
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return sequencesHeight; |
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} |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
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public int getGraphHeight()... |
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{ |
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return graphHeight; |
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} |
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| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
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public float getPixelsPerCol()... |
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{ |
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resetAlignmentDims(); |
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return 1 / widthRatio; |
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} |
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| 100% |
Uncovered Elements: 0 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
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public float getPixelsPerSeq()... |
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{ |
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resetAlignmentDims(); |
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return 1 / heightRatio; |
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} |
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| 75% |
Uncovered Elements: 1 (4) |
Complexity: 2 |
Complexity Density: 1 |
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public void setWidth(int w)... |
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{ |
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width = w < 1 ? 1 : w; |
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widthRatio = (float) alwidth / width; |
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} |
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| 75% |
Uncovered Elements: 1 (4) |
Complexity: 2 |
Complexity Density: 1 |
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public void setHeight(int h)... |
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{ |
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sequencesHeight = (h < 1 ? 1 : h) - graphHeight; |
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heightRatio = (float) alheight / sequencesHeight; |
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} |
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@param |
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@param |
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@param |
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@param |
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public abstract void updateViewportFromMouse(int mousex, int mousey, |
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HiddenSequences hiddenSeqs, HiddenColumns hiddenCols); |
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@param |
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@param |
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@param |
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@param |
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public abstract void adjustViewportFromMouse(int mousex, int mousey, |
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HiddenSequences hiddenSeqs, HiddenColumns hiddenCols); |
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@param |
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@param |
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@param |
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@param |
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public abstract void setDragPoint(int x, int y, |
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HiddenSequences hiddenSeqs, HiddenColumns hiddenCols); |
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protected abstract void updateViewportFromTopLeft(int leftx, int topy, |
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HiddenSequences hiddenSeqs, HiddenColumns hiddenCols); |
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@param |
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@param |
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public abstract void setBoxPosition(HiddenSequences hiddenSeqs, |
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HiddenColumns hiddenCols); |
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@param |
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@return |
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public abstract AlignmentColsCollectionI getColumns(AlignmentI al); |
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@param |
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@return |
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public abstract AlignmentRowsCollectionI getRows(AlignmentI al); |
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protected abstract void resetAlignmentDims(); |
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| 100% |
Uncovered Elements: 0 (6) |
Complexity: 1 |
Complexity Density: 0.17 |
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protected void setBoxPosition(int startRes, int startSeq, int vpwidth,... |
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int vpheight) |
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{ |
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resetAlignmentDims(); |
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int xPos = Math.min(startRes, alwidth - vpwidth + 1); |
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boxX = Math.round(xPos / widthRatio); |
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boxY = Math.round(startSeq / heightRatio); |
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boxWidth = Math.round(vpwidth / widthRatio); |
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boxHeight = Math.round(vpheight / heightRatio); |
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} |
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@param |
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@param |
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@return |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
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public boolean isPositionInBox(int x, int y)... |
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{ |
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return (x > boxX && y > boxY && x < boxX + boxWidth |
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&& y < boxY + boxHeight); |
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} |
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protected abstract int getLeftXFromCentreX(int mousex, |
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HiddenColumns hidden); |
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protected abstract int getTopYFromCentreY(int mousey, |
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HiddenSequences hidden); |
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} |