Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
FTSRestResponse	41	33	18	0.854545585.5%	Show methods

Class FTSRestResponse

Class FTSRestResponse	Line # 41	Total Statements 33	Complexity 18	TOTAL Coverage 0.854545585.5%
getNumberOfItemsFound() : int   getNumberOfItemsFound() : int	4949	1.01	1.01	1.0 1.0100%
setNumberOfItemsFound(int) : void   setNumberOfItemsFound(int) : void	5454	1.01	1.01	1.0 1.0100%
getResponseTime() : String   getResponseTime() : String	5959	1.01	1.01	0.0 0.00%
setResponseTime(String) : void   setResponseTime(String) : void	6464	1.01	1.01	1.0 1.0100%
getSearchSummary() : Collection<FTSData>   getSearchSummary() : Collection<FTSData>	6969	1.01	1.01	1.0 1.0100%
setSearchSummary(Collection<FTSData>) : void   setSearchSummary(Collection<FTSData>) : void	7474	1.01	1.01	1.0 1.0100%
isCellEditable(int,int) : boolean   isCellEditable(int,int) : boolean	9999	1.01	1.01	0.0 0.00%
getColumnClass(int) : Class<?>   getColumnClass(int) : Class<?>	105105	3.03	3.03	1.0 1.0100%
getTableModel(FTSRestRequest,Collection<FTSData>) : DefaultTableModel   getTableModel(FTSRestRequest,Collection<FTSData>) : DefaultTableModel	9191	10.010	3.03	0.85714287 0.8571428785.7%
configureTableColumn(JTable,Collection<FTSDataColumnI>,Map<String, Integer>) : void   configureTableColumn(JTable,Collection<FTSDataColumnI>,Map<String, Integer>) : void	137137	13.013	5.05	0.8947368 0.894736889.5%

 

Contributing tests

Contributing tests

Select all

	Test contribution	Test	Result	Actions
	0.8545455	jalview.gui.StructureChooserTest.fetchStructuresInfoMockedTestjalview.gui.StructureChooserTest.fetchStructuresInfoMockedTest	1PASS
	0.18181819	jalview.gui.structurechooser.StructureChooserQuerySourceTest.cascadingThreeDBandPDBQuerysjalview.gui.structurechooser.StructureChooserQuerySourceTest.cascadingThreeDBandPDBQuerys	1PASS
	0.18181819	jalview.gui.structurechooser.StructureChooserQuerySourceTest.cascadingThreeDBandPDBQuerysjalview.gui.structurechooser.StructureChooserQuerySourceTest.cascadingThreeDBandPDBQuerys	1PASS
	0.18181819	jalview.gui.structurechooser.StructureChooserQuerySourceTest.cascadingThreeDBandPDBQuerysjalview.gui.structurechooser.StructureChooserQuerySourceTest.cascadingThreeDBandPDBQuerys	1PASS
	0.18181819	jalview.gui.structurechooser.StructureChooserQuerySourceTest.cascadingThreeDBandPDBQuerysjalview.gui.structurechooser.StructureChooserQuerySourceTest.cascadingThreeDBandPDBQuerys	1PASS
	0.18181819	jalview.gui.structurechooser.StructureChooserQuerySourceTest.cascadingThreeDBandPDBQuerysjalview.gui.structurechooser.StructureChooserQuerySourceTest.cascadingThreeDBandPDBQuerys	1PASS
	0.14545454	jalview.fts.threedbeacons.TDBeaconsFTSRestClientTest.testMockTDBRequestjalview.fts.threedbeacons.TDBeaconsFTSRestClientTest.testMockTDBRequest	1PASS

 

Source view

1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21
22		package jalview.fts.core;
23
24		import jalview.datamodel.SequenceI;
25		import jalview.fts.api.FTSData;
26		import jalview.fts.api.FTSDataColumnI;
27
28		import java.util.Collection;
29		import java.util.Map;
30
31		import javax.swing.JTable;
32		import javax.swing.table.DefaultTableModel;
33
34		/**
35		* Represents the response model generated by the FTSRestClient upon successful
36		* execution of a given FTS request
37		*
38		* @author tcnofoegbu
39		*
40		*/
		85.5% Uncovered Elements: 8 (55) Complexity: 18 Complexity Density: 0.55
41		public class FTSRestResponse
42		{
43		private int numberOfItemsFound;
44
45		private String responseTime;
46
47		private Collection<FTSData> searchSummary;
48
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
49	58	public int getNumberOfItemsFound()...
50		{
51	58	return numberOfItemsFound;
52		}
53
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
54	51	public void setNumberOfItemsFound(int itemFound)...
55		{
56	51	this.numberOfItemsFound = itemFound;
57		}
58
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
59	0	public String getResponseTime()...
60		{
61	0	return responseTime;
62		}
63
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
64	32	public void setResponseTime(String responseTime)...
65		{
66	32	this.responseTime = responseTime;
67		}
68
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
69	29114	public Collection<FTSData> getSearchSummary()...
70		{
71	29114	return searchSummary;
72		}
73
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
74	51	public void setSearchSummary(Collection<FTSData> searchSummary)...
75		{
76	51	this.searchSummary = searchSummary;
77		}
78
79		/**
80		* Convenience method to obtain a Table model for a given summary List based
81		* on the request parameters
82		*
83		* @param request
84		* the FTSRestRequest object which holds useful information for
85		* creating a table model
86		* @param summariesList
87		* the summary list which contains the data for populating the
88		* table's rows
89		* @return the table model which was dynamically generated
90		*/
		85.7% Uncovered Elements: 2 (14) Complexity: 3 Complexity Density: 0.3
91	3	public static DefaultTableModel getTableModel(FTSRestRequest request,...
92		Collection<FTSData> summariesList)
93		{
94	3	final FTSDataColumnI[] cols = request.getWantedFields()
95		.toArray(new FTSDataColumnI[0]);
96	3	final int colOffset = request.getAssociatedSequence() == null ? 0 : 1;
97	3	DefaultTableModel tableModel = new DefaultTableModel()
98		{
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
99	0	@Override...
100		public boolean isCellEditable(int row, int column)
101		{
102	0	return false;
103		}
104
		100% Uncovered Elements: 0 (5) Complexity: 3 Complexity Density: 1
105	32	@Override...
106		public Class<?> getColumnClass(int columnIndex)
107		{
108	32	if (colOffset == 1 && columnIndex == 0)
109		{
110	2	return SequenceI.class;
111		}
112	30	return cols[columnIndex - colOffset].getDataType()
113		.getDataTypeClass();
114		}
115
116		};
117	3	if (request.getAssociatedSequence() != null)
118		{
119	3	tableModel.addColumn("Ref Sequence"); // Create sequence column header if
120		// exists in the request
121		}
122	3	for (FTSDataColumnI field : request.getWantedFields())
123		{
124	45	tableModel.addColumn(field.getName()); // Create sequence column header if
125		// exists in the request
126		}
127
128	3	for (FTSData res : summariesList)
129		{
130	127	tableModel.addRow(res.getSummaryData()); // Populate table rows with
131		// summary list
132		}
133
134	3	return tableModel;
135		}
136
		89.5% Uncovered Elements: 2 (19) Complexity: 5 Complexity Density: 0.38
137	1	public static void configureTableColumn(JTable tbl_summary,...
138		Collection<FTSDataColumnI> wantedFields,
139		Map<String, Integer> columnPrefs)
140		{
141	1	for (FTSDataColumnI wantedField : wantedFields)
142		{
143	15	try
144		{
145	15	tbl_summary.getColumn(wantedField.getName())
146		.setMinWidth(wantedField.getMinWidth());
147	15	tbl_summary.getColumn(wantedField.getName())
148		.setMaxWidth(wantedField.getMaxWidth());
149	15	int prefedWidth = columnPrefs.get(wantedField.getName()) == null
150		? wantedField.getPreferredWidth()
151		: columnPrefs.get(wantedField.getName());
152	15	tbl_summary.getColumn(wantedField.getName())
153		.setPreferredWidth(prefedWidth);
154		} catch (Exception e)
155		{
156	0	e.printStackTrace();
157		}
158	15	if (wantedField.getDataType().getDataTypeClass() == Double.class)
159		{
160	3	DecimalFormatTableCellRenderer dfr = new DecimalFormatTableCellRenderer(
161		wantedField.getDataType().isFormtted(),
162		wantedField.getDataType().getSignificantFigures());
163	3	tbl_summary.getColumn(wantedField.getName()).setCellRenderer(dfr);
164		}
165	12	else if (wantedField.getDataType()
166		.getDataTypeClass() == Integer.class)
167		{
168	2	DecimalFormatTableCellRenderer dfr = new DecimalFormatTableCellRenderer(
169		wantedField.getDataType().isFormtted(),
170		wantedField.getDataType().getSignificantFigures());
171	2	tbl_summary.getColumn(wantedField.getName()).setCellRenderer(dfr);
172		}
173		}
174		}
175
176		}