Clover icon

Coverage Report

Test simpleGff3FileLoader

Test
simpleGff3FileLoader 1PASS 28 Nov 11:48:01 0.018
 
simpleGff3FileLoader
jalview.io.DataSourceType   jalview.io.DataSourceType 1.0100%
jalview.io.gff.Gff2Helper   jalview.io.gff.Gff2Helper 1.0100%
jalview.datamodel.SequenceDummy   jalview.datamodel.SequenceDummy 1.0100%
jalview.datamodel.ResidueCount.SymbolCounts   jalview.datamodel.ResidueCount.SymbolCounts 1.0100%
jalview.jbgui.GAlignmentPanel   jalview.jbgui.GAlignmentPanel 0.9494%
jalview.workers.ComplementConsensusThread   jalview.workers.ComplementConsensusThread 0.916666791.7%
jalview.analysis.Conservation   jalview.analysis.Conservation 0.8842364588.4%
jalview.util.LinkedIdentityHashSet   jalview.util.LinkedIdentityHashSet 0.7727272577.3%
jalview.io.gff.GffHelperFactory   jalview.io.gff.GffHelperFactory 0.7575%
jalview.datamodel.Profiles   jalview.datamodel.Profiles 0.7333333573.3%
jalview.gui.FeatureRenderer   jalview.gui.FeatureRenderer 0.7142857371.4%
jalview.util.LinkedIdentityHashSet.IdentityWrapper   jalview.util.LinkedIdentityHashSet.IdentityWrapper 0.7142857371.4%
jalview.analysis.CodingUtils   jalview.analysis.CodingUtils 0.7068965470.7%
jalview.workers.ConsensusThread   jalview.workers.ConsensusThread 0.696969769.7%
jalview.io.gff.ExonerateHelper   jalview.io.gff.ExonerateHelper 0.6190476461.9%
jalview.jbgui.GAlignFrame   jalview.jbgui.GAlignFrame 0.581220758.1%
jalview.workers.ConservationThread   jalview.workers.ConservationThread 0.568965556.9%
jalview.viewmodel.ViewportProperties   jalview.viewmodel.ViewportProperties 0.550%
jalview.io.gff.SequenceOntologyFactory   jalview.io.gff.SequenceOntologyFactory 0.550%
jalview.schemes.TaylorColourScheme   jalview.schemes.TaylorColourScheme 0.550%
jalview.schemes.FlowerColourScheme   jalview.schemes.FlowerColourScheme 0.550%
jalview.schemes.ZappoColourScheme   jalview.schemes.ZappoColourScheme 0.550%
jalview.schemes.NucleotideAmbiguityColourScheme   jalview.schemes.NucleotideAmbiguityColourScheme 0.550%
jalview.schemes.PurinePyrimidineColourScheme   jalview.schemes.PurinePyrimidineColourScheme 0.550%
jalview.schemes.NucleotideColourScheme   jalview.schemes.NucleotideColourScheme 0.550%
jalview.schemes.BlossomColourScheme   jalview.schemes.BlossomColourScheme 0.550%
jalview.schemes.SunsetColourScheme   jalview.schemes.SunsetColourScheme 0.550%
jalview.schemes.OceanColourScheme   jalview.schemes.OceanColourScheme 0.550%
jalview.analysis.SequenceIdMatcher.SeqIdName   jalview.analysis.SequenceIdMatcher.SeqIdName 0.550%
jalview.io.gff.GffHelperBase   jalview.io.gff.GffHelperBase 0.4834123348.3%
jalview.util.MessageManager   jalview.util.MessageManager 0.4761904847.6%
jalview.analysis.SequenceIdMatcher   jalview.analysis.SequenceIdMatcher 0.447368444.7%
jalview.io.AlignFile   jalview.io.AlignFile 0.4452054844.5%
jalview.io.FileLoader   jalview.io.FileLoader 0.434782643.5%
jalview.gui.ColourMenuHelper   jalview.gui.ColourMenuHelper 0.4322033843.2%
jalview.util.QuickSort.IntComparator   jalview.util.QuickSort.IntComparator 0.4285714342.9%
jalview.datamodel.HiddenCursorPosition   jalview.datamodel.HiddenCursorPosition 0.4285714342.9%
jalview.datamodel.features.FeatureAttributes.AttributeData   jalview.datamodel.features.FeatureAttributes.AttributeData 0.4255319242.6%
jalview.util.ShortcutKeyMaskExWrapper11   jalview.util.ShortcutKeyMaskExWrapper11 0.4166666641.7%
jalview.analysis.AAFrequency   jalview.analysis.AAFrequency 0.405063340.5%
jalview.datamodel.MappingType   jalview.datamodel.MappingType 0.440%
jalview.schemes.HydrophobicColourScheme   jalview.schemes.HydrophobicColourScheme 0.440%
jalview.schemes.HelixColourScheme   jalview.schemes.HelixColourScheme 0.440%
jalview.schemes.TurnColourScheme   jalview.schemes.TurnColourScheme 0.440%
jalview.schemes.StrandColourScheme   jalview.schemes.StrandColourScheme 0.440%
jalview.schemes.BuriedColourScheme   jalview.schemes.BuriedColourScheme 0.440%
jalview.workers.AlignCalcManager   jalview.workers.AlignCalcManager 0.3928571339.3%
jalview.datamodel.ResidueCount   jalview.datamodel.ResidueCount 0.3854545438.5%
jalview.datamodel.Profile   jalview.datamodel.Profile 0.37537.5%
jalview.datamodel.AlignedCodonFrame   jalview.datamodel.AlignedCodonFrame 0.3617747436.2%
jalview.io.FileFormats   jalview.io.FileFormats 0.3636%
jalview.schemes.ResidueColourScheme   jalview.schemes.ResidueColourScheme 0.3571428735.7%
jalview.io.FastaFile   jalview.io.FastaFile 0.3423423534.2%
jalview.util.Comparison   jalview.util.Comparison 0.3228346432.3%
jalview.viewmodel.styles.ViewStyle   jalview.viewmodel.styles.ViewStyle 0.3007812530.1%
jalview.schemes.JalviewColourScheme   jalview.schemes.JalviewColourScheme 0.285714328.6%
jalview.gui.AlignViewport   jalview.gui.AlignViewport 0.2694063826.9%
jalview.ext.so.SequenceOntology   jalview.ext.so.SequenceOntology 0.2687526.9%
jalview.io.FileParse   jalview.io.FileParse 0.256267425.6%
jalview.gui.JalviewChangeSupport   jalview.gui.JalviewChangeSupport 0.2525%
jalview.datamodel.features.FeatureAttributes   jalview.datamodel.features.FeatureAttributes 0.2403100724%
jalview.datamodel.SequenceCursor   jalview.datamodel.SequenceCursor 0.2333333323.3%
jalview.io.FeaturesFile   jalview.io.FeaturesFile 0.2270029622.7%
jalview.gui.AlignmentPanel   jalview.gui.AlignmentPanel 0.2226148422.3%
jalview.log.JalviewAppender   jalview.log.JalviewAppender 0.2222222222.2%
jalview.datamodel.Sequence   jalview.datamodel.Sequence 0.2162629821.6%
jalview.viewmodel.AlignmentViewport   jalview.viewmodel.AlignmentViewport 0.2116843821.2%
jalview.datamodel.features.FeatureStore   jalview.datamodel.features.FeatureStore 0.2024169120.2%
jalview.io.gff.InterProScanHelper   jalview.io.gff.InterProScanHelper 0.220%
jalview.io.IdentifyFile   jalview.io.IdentifyFile 0.1873015918.7%
jalview.datamodel.features.SequenceFeatures   jalview.datamodel.features.SequenceFeatures 0.1847133818.5%
jalview.util.MapList   jalview.util.MapList 0.1838006218.4%
jalview.datamodel.Alignment   jalview.datamodel.Alignment 0.1824953418.2%
jalview.util.QuickSort   jalview.util.QuickSort 0.1779935217.8%
jalview.schemes.IdColourScheme   jalview.schemes.IdColourScheme 0.1739130517.4%
jalview.analysis.AnnotationSorter   jalview.analysis.AnnotationSorter 0.1674876816.7%
jalview.datamodel.SequenceFeature   jalview.datamodel.SequenceFeature 0.1582733815.8%
jalview.util.Format   jalview.util.Format 0.1490683314.9%
jalview.schemes.TCoffeeColourScheme   jalview.schemes.TCoffeeColourScheme 0.1475409914.8%
jalview.gui.Desktop.MyDesktopPane   jalview.gui.Desktop.MyDesktopPane 0.1428571514.3%
jalview.gui.PaintRefresher   jalview.gui.PaintRefresher 0.1408450814.1%
jalview.viewmodel.ViewportRanges   jalview.viewmodel.ViewportRanges 0.1287128812.9%
jalview.io.FormatAdapter   jalview.io.FormatAdapter 0.1212%
jalview.schemes.Blosum62ColourScheme   jalview.schemes.Blosum62ColourScheme 0.1176470611.8%
jalview.gui.JvSwingUtils   jalview.gui.JvSwingUtils 0.1156462611.6%
jalview.analysis.scoremodels.ScoreModels   jalview.analysis.scoremodels.ScoreModels 0.11538461611.5%
jalview.datamodel.Annotation   jalview.datamodel.Annotation 0.11428571511.4%
jalview.util.ShortcutKeyMaskExWrapper   jalview.util.ShortcutKeyMaskExWrapper 0.1111111111.1%
jalview.schemes.ColourSchemeProperty   jalview.schemes.ColourSchemeProperty 0.1111111111.1%
jalview.io.FileFormat   jalview.io.FileFormat 0.1085271310.9%
jalview.util.StringUtils   jalview.util.StringUtils 0.10153846410.2%
jalview.io.AppletFormatAdapter   jalview.io.AppletFormatAdapter 0.0993788849.9%
jalview.workers.AlignCalcWorker   jalview.workers.AlignCalcWorker 0.09523819.5%
jalview.util.MappingUtils   jalview.util.MappingUtils 0.0948275859.5%
jalview.util.ColorUtils   jalview.util.ColorUtils 0.0860215058.6%
jalview.gui.Console   jalview.gui.Console 0.082568818.3%
jalview.schemes.RNAHelicesColour   jalview.schemes.RNAHelicesColour 0.082191788.2%
jalview.gui.ProgressBar   jalview.gui.ProgressBar 0.081300818.1%
jalview.datamodel.AlignmentAnnotation   jalview.datamodel.AlignmentAnnotation 0.0757.5%
jalview.gui.AlignFrame   jalview.gui.AlignFrame 0.07201727.2%
jalview.analysis.AlignmentUtils   jalview.analysis.AlignmentUtils 0.070906437.1%
jalview.schemes.ColourSchemes   jalview.schemes.ColourSchemes 0.070175447%
jalview.gui.IdPanel   jalview.gui.IdPanel 0.067264576.7%
jalview.schemes.PIDColourScheme   jalview.schemes.PIDColourScheme 0.066666676.7%
jalview.log.JLogger   jalview.log.JLogger 0.065934076.6%
jalview.gui.IdwidthAdjuster   jalview.gui.IdwidthAdjuster 0.0657894766.6%
jalview.renderer.ResidueShader   jalview.renderer.ResidueShader 0.064285726.4%
jalview.analysis.CrossRef   jalview.analysis.CrossRef 0.063524596.4%
jalview.datamodel.AlignedCodonFrame.SequenceToSequenceMapping   jalview.datamodel.AlignedCodonFrame.SequenceToSequenceMapping 0.06256.2%
jalview.analysis.scoremodels.ScoreMatrix   jalview.analysis.scoremodels.ScoreMatrix 0.0617283966.2%
jalview.gui.ViewSelectionMenu   jalview.gui.ViewSelectionMenu 0.059405945.9%
jalview.bin.Console   jalview.bin.Console 0.05911335.9%
jalview.util.Platform   jalview.util.Platform 0.0566037745.7%
jalview.datamodel.Mapping   jalview.datamodel.Mapping 0.0519480525.2%
jalview.analysis.GeneticCodes   jalview.analysis.GeneticCodes 0.0496894425%
jalview.bin.Cache   jalview.bin.Cache 0.0482093654.8%
jalview.structure.StructureSelectionManager   jalview.structure.StructureSelectionManager 0.0466666674.7%
jalview.gui.AnnotationPanel   jalview.gui.AnnotationPanel 0.044117654.4%
jalview.datamodel.ColumnSelection.IntList   jalview.datamodel.ColumnSelection.IntList 0.0373831763.7%
jalview.gui.Desktop   jalview.gui.Desktop 0.0307517093.1%
jalview.datamodel.HiddenSequences   jalview.datamodel.HiddenSequences 0.027397262.7%
jalview.gui.IdCanvas   jalview.gui.IdCanvas 0.0245614032.5%
jalview.util.DBRefUtils   jalview.util.DBRefUtils 0.0241691842.4%
jalview.renderer.ResidueColourFinder   jalview.renderer.ResidueColourFinder 0.0238095242.4%
jalview.gui.ScalePanel   jalview.gui.ScalePanel 0.02343752.3%
jalview.schemes.ClustalxColourScheme   jalview.schemes.ClustalxColourScheme 0.0169491531.7%
jalview.datamodel.HiddenColumnsCursor   jalview.datamodel.HiddenColumnsCursor 0.0156251.6%
jalview.gui.SequenceRenderer   jalview.gui.SequenceRenderer 0.0144230771.4%
jalview.controller.AlignViewController   jalview.controller.AlignViewController 0.0136518771.4%
jalview.analysis.AlignSeq   jalview.analysis.AlignSeq 0.0128205131.3%
jalview.gui.SeqPanel   jalview.gui.SeqPanel 0.0125412541.3%
jalview.io.SequenceAnnotationReport   jalview.io.SequenceAnnotationReport 0.0122699381.2%
jalview.gui.AnnotationLabels   jalview.gui.AnnotationLabels 0.01150747951.2%
jalview.gui.SeqCanvas   jalview.gui.SeqCanvas 0.0080160320.8%
jalview.renderer.seqfeatures.FeatureRenderer   jalview.renderer.seqfeatures.FeatureRenderer 0.007547170.8%
jalview.gui.QuitHandler   jalview.gui.QuitHandler 0.00722021660.7%
jalview.datamodel.HiddenColumns   jalview.datamodel.HiddenColumns 0.0070754720.7%
jalview.bin.Jalview   jalview.bin.Jalview 0.0045703840.5%
jalview.renderer.AnnotationRenderer   jalview.renderer.AnnotationRenderer 0.00362318850.4%
jalview.datamodel.ColumnSelection   jalview.datamodel.ColumnSelection 0.00343642620.3%