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Test testJalviewProjectRelocationAnnotation

Test
testJalviewProjectRelocationAnnotation 1PASS 28 Nov 11:47:45 0.854
 
testJalviewProjectRelocationAnnotation
com.stevesoft.pat.patInf   com.stevesoft.pat.patInf 1.0100%
jalview.io.DataSourceType   jalview.io.DataSourceType 1.0100%
jalview.xml.binding.jalview.AnnotationElement   jalview.xml.binding.jalview.AnnotationElement 1.0100%
jalview.xml.binding.jalview.SequenceType   jalview.xml.binding.jalview.SequenceType 1.0100%
jalview.xml.binding.jalview.JalviewModel.FeatureSettings   jalview.xml.binding.jalview.JalviewModel.FeatureSettings 1.0100%
jalview.xml.binding.jalview.JalviewModel.FeatureSettings.Group   jalview.xml.binding.jalview.JalviewModel.FeatureSettings.Group 1.0100%
jalview.xml.binding.jalview.Pdbentry   jalview.xml.binding.jalview.Pdbentry 1.0100%
jalview.xml.binding.jalview.Pdbentry.Property   jalview.xml.binding.jalview.Pdbentry.Property 1.0100%
jalview.ws.WSClient   jalview.ws.WSClient 1.0100%
jalview.project.Jalview2XML.JvAnnotRow   jalview.project.Jalview2XML.JvAnnotRow 1.0100%
jalview.datamodel.ResidueCount.SymbolCounts   jalview.datamodel.ResidueCount.SymbolCounts 1.0100%
jalview.jbgui.GAlignmentPanel   jalview.jbgui.GAlignmentPanel 0.9494%
jalview.io.BackupFilenameFilter   jalview.io.BackupFilenameFilter 0.928571492.9%
jalview.xml.binding.jalview.Feature   jalview.xml.binding.jalview.Feature 0.911764791.2%
jalview.xml.binding.jalview.SequenceSet   jalview.xml.binding.jalview.SequenceSet 0.894736889.5%
jalview.analysis.Conservation   jalview.analysis.Conservation 0.874384287.4%
jalview.viewmodel.styles.ViewStyle   jalview.viewmodel.styles.ViewStyle 0.8476562584.8%
com.stevesoft.pat.Rthings   com.stevesoft.pat.Rthings 0.8461538684.6%
mc_view.Residue   mc_view.Residue 0.8461538684.6%
jalview.xml.binding.jalview.JalviewModel.Viewport   jalview.xml.binding.jalview.JalviewModel.Viewport 0.844202984.4%
jalview.xml.binding.jalview.JalviewModel.JSeq.Pdbids   jalview.xml.binding.jalview.JalviewModel.JSeq.Pdbids 0.833333383.3%
jalview.xml.binding.jalview.JalviewModel   jalview.xml.binding.jalview.JalviewModel 0.807692380.8%
jalview.xml.binding.jalview.Annotation   jalview.xml.binding.jalview.Annotation 0.790909179.1%
jalview.gui.ItemsRenderer   jalview.gui.ItemsRenderer 0.777777877.8%
jalview.util.LinkedIdentityHashSet   jalview.util.LinkedIdentityHashSet 0.7727272577.3%
jalview.xml.binding.jalview.JalviewModel.JSeq   jalview.xml.binding.jalview.JalviewModel.JSeq 0.770833377.1%
jalview.gui.JalviewChangeSupport   jalview.gui.JalviewChangeSupport 0.7575%
jalview.xml.binding.jalview.Sequence.DBRef   jalview.xml.binding.jalview.Sequence.DBRef 0.7575%
jalview.io.BackupFilesPresetEntry   jalview.io.BackupFilesPresetEntry 0.735294173.5%
jalview.datamodel.Profiles   jalview.datamodel.Profiles 0.7333333573.3%
jalview.gui.FeatureRenderer   jalview.gui.FeatureRenderer 0.7142857371.4%
jalview.xml.binding.jalview.Sequence   jalview.xml.binding.jalview.Sequence 0.7142857371.4%
jalview.util.LinkedIdentityHashSet.IdentityWrapper   jalview.util.LinkedIdentityHashSet.IdentityWrapper 0.7142857371.4%
jalview.ws.jws2.jabaws2.Jws2Instance   jalview.ws.jws2.jabaws2.Jws2Instance 0.712643771.3%
jalview.ws.jws2.jabaws2.Jws2InstanceFactory   jalview.ws.jws2.jabaws2.Jws2InstanceFactory 0.770%
jalview.workers.ConsensusThread   jalview.workers.ConsensusThread 0.696969769.7%
jalview.ws.SequenceFetcher   jalview.ws.SequenceFetcher 0.678571467.9%
jalview.jbgui.GAlignFrame   jalview.jbgui.GAlignFrame 0.581220758.1%
jalview.schemes.FeatureSettingsAdapter   jalview.schemes.FeatureSettingsAdapter 0.571428657.1%
jalview.workers.ConservationThread   jalview.workers.ConservationThread 0.568965556.9%
jalview.util.MessageManager   jalview.util.MessageManager 0.5238095552.4%
com.stevesoft.pat.StrPos   com.stevesoft.pat.StrPos 0.523255852.3%
com.stevesoft.pat.OrMark   com.stevesoft.pat.OrMark 0.550%
jalview.viewmodel.ViewportProperties   jalview.viewmodel.ViewportProperties 0.550%
jalview.xml.binding.jalview.VAMSAS   jalview.xml.binding.jalview.VAMSAS 0.550%
mc_view.Bond   mc_view.Bond 0.550%
com.stevesoft.pat.wrap.StringWrap   com.stevesoft.pat.wrap.StringWrap 0.550%
jalview.schemes.TaylorColourScheme   jalview.schemes.TaylorColourScheme 0.550%
jalview.schemes.FlowerColourScheme   jalview.schemes.FlowerColourScheme 0.550%
jalview.schemes.ZappoColourScheme   jalview.schemes.ZappoColourScheme 0.550%
jalview.schemes.NucleotideAmbiguityColourScheme   jalview.schemes.NucleotideAmbiguityColourScheme 0.550%
jalview.schemes.PurinePyrimidineColourScheme   jalview.schemes.PurinePyrimidineColourScheme 0.550%
jalview.schemes.NucleotideColourScheme   jalview.schemes.NucleotideColourScheme 0.550%
jalview.schemes.BlossomColourScheme   jalview.schemes.BlossomColourScheme 0.550%
jalview.schemes.SunsetColourScheme   jalview.schemes.SunsetColourScheme 0.550%
jalview.schemes.OceanColourScheme   jalview.schemes.OceanColourScheme 0.550%
jalview.ext.jmol.JmolParser   jalview.ext.jmol.JmolParser 0.49649.6%
com.stevesoft.pat.oneChar   com.stevesoft.pat.oneChar 0.485714348.6%
jalview.structure.StructureImportSettings   jalview.structure.StructureImportSettings 0.485714348.6%
jalview.io.FileLoader   jalview.io.FileLoader 0.471571947.2%
jalview.gui.SplashScreen.SplashImage   jalview.gui.SplashScreen.SplashImage 0.4705882447.1%
jalview.datamodel.PDBEntry   jalview.datamodel.PDBEntry 0.4625550846.3%
jalview.ws.jws2.MsaWSClient   jalview.ws.jws2.MsaWSClient 0.4429530244.3%
jalview.workers.AlignCalcManager   jalview.workers.AlignCalcManager 0.4404761844%
jalview.gui.AlignViewport   jalview.gui.AlignViewport 0.4383561643.8%
jalview.io.StructureFile   jalview.io.StructureFile 0.4325581543.3%
jalview.gui.ColourMenuHelper   jalview.gui.ColourMenuHelper 0.4322033843.2%
jalview.datamodel.HiddenCursorPosition   jalview.datamodel.HiddenCursorPosition 0.4285714342.9%
jalview.util.ShortcutKeyMaskExWrapper11   jalview.util.ShortcutKeyMaskExWrapper11 0.4166666641.7%
jalview.io.FileFormats   jalview.io.FileFormats 0.440%
jalview.ws.dbsources.EmblSource   jalview.ws.dbsources.EmblSource 0.440%
jalview.ws.jws2.Jws2Discoverer   jalview.ws.jws2.Jws2Discoverer 0.440%
jalview.schemes.HydrophobicColourScheme   jalview.schemes.HydrophobicColourScheme 0.440%
jalview.schemes.HelixColourScheme   jalview.schemes.HelixColourScheme 0.440%
jalview.schemes.TurnColourScheme   jalview.schemes.TurnColourScheme 0.440%
jalview.schemes.StrandColourScheme   jalview.schemes.StrandColourScheme 0.440%
jalview.schemes.BuriedColourScheme   jalview.schemes.BuriedColourScheme 0.440%
jalview.log.JalviewAppender   jalview.log.JalviewAppender 0.388888938.9%
jalview.datamodel.Profile   jalview.datamodel.Profile 0.37537.5%
jalview.io.BackupFilenameParts   jalview.io.BackupFilenameParts 0.3648648636.5%
jalview.project.Jalview2XML   jalview.project.Jalview2XML 0.3612108836.1%
jalview.schemes.ResidueColourScheme   jalview.schemes.ResidueColourScheme 0.3571428735.7%
jalview.datamodel.ResidueCount   jalview.datamodel.ResidueCount 0.3563636235.6%
jalview.viewmodel.AlignmentViewport   jalview.viewmodel.AlignmentViewport 0.3437025834.4%
jalview.gui.AlignmentPanel   jalview.gui.AlignmentPanel 0.3333333433.3%
jalview.datamodel.features.SequenceFeatures   jalview.datamodel.features.SequenceFeatures 0.3248407532.5%
jalview.xml.binding.jalview.JalviewModel.FeatureSettings.Setting   jalview.xml.binding.jalview.JalviewModel.FeatureSettings.Setting 0.3225806432.3%
jalview.io.AlignFile   jalview.io.AlignFile 0.321917832.2%
mc_view.PDBChain   mc_view.PDBChain 0.3214285732.1%
jalview.util.Format   jalview.util.Format 0.3209109632.1%
jalview.util.Comparison   jalview.util.Comparison 0.3188976331.9%
jalview.io.IdentifyFile   jalview.io.IdentifyFile 0.3174603331.7%
jalview.datamodel.AlignmentAnnotation   jalview.datamodel.AlignmentAnnotation 0.31531.5%
jalview.ws.rest.RestServiceDescription   jalview.ws.rest.RestServiceDescription 0.31531.5%
jalview.datamodel.PDBEntry.Type   jalview.datamodel.PDBEntry.Type 0.312531.2%
com.stevesoft.pat.Pattern   com.stevesoft.pat.Pattern 0.3055555530.6%
jalview.viewmodel.ViewportRanges   jalview.viewmodel.ViewportRanges 0.2937293629.4%
jalview.io.BackupFiles   jalview.io.BackupFiles 0.29229.2%
jalview.ws.jws2.SequenceAnnotationWSClient   jalview.ws.jws2.SequenceAnnotationWSClient 0.2903225729%
jalview.ws.dbsources.EmblCdsSource   jalview.ws.dbsources.EmblCdsSource 0.285714328.6%
jalview.datamodel.Annotation   jalview.datamodel.Annotation 0.285714328.6%
jalview.schemes.JalviewColourScheme   jalview.schemes.JalviewColourScheme 0.285714328.6%
jalview.datamodel.annotations.AnnotationRowBuilder   jalview.datamodel.annotations.AnnotationRowBuilder 0.282051328.2%
mc_view.Atom   mc_view.Atom 0.282051328.2%
jalview.viewmodel.seqfeatures.FeaturesDisplayed   jalview.viewmodel.seqfeatures.FeaturesDisplayed 0.2812528.1%
jalview.datamodel.Sequence   jalview.datamodel.Sequence 0.276816627.7%
jalview.ws.jws2.JabaPreset   jalview.ws.jws2.JabaPreset 0.2727272827.3%
com.stevesoft.pat.Or   com.stevesoft.pat.Or 0.2692307826.9%
jalview.gui.JvSwingUtils   jalview.gui.JvSwingUtils 0.258503425.9%
jalview.datamodel.features.FeatureStore   jalview.datamodel.features.FeatureStore 0.2567975825.7%
jalview.gui.PaintRefresher   jalview.gui.PaintRefresher 0.253521125.4%
com.stevesoft.pat.Regex   com.stevesoft.pat.Regex 0.250909125.1%
jalview.ws.jws2.JabaWsServerQuery   jalview.ws.jws2.JabaWsServerQuery 0.2525%
jalview.datamodel.SequenceFeature   jalview.datamodel.SequenceFeature 0.2482014424.8%
jalview.viewmodel.seqfeatures.FeatureRendererModel   jalview.viewmodel.seqfeatures.FeatureRendererModel 0.245696424.6%
jalview.ws.uimodel.AlignAnalysisUIText   jalview.ws.uimodel.AlignAnalysisUIText 0.2439024424.4%
jalview.ws.rest.params.Alignment   jalview.ws.rest.params.Alignment 0.2435897424.4%
jalview.datamodel.SequenceCursor   jalview.datamodel.SequenceCursor 0.2333333323.3%
com.stevesoft.pat.Range   com.stevesoft.pat.Range 0.2272727322.7%
com.stevesoft.pat.Bracket   com.stevesoft.pat.Bracket 0.22522.5%
jalview.ws.jws2.Jws2Client   jalview.ws.jws2.Jws2Client 0.2228915722.3%
jalview.io.PDBFeatureSettings   jalview.io.PDBFeatureSettings 0.2142857221.4%
jalview.util.QuickSort   jalview.util.QuickSort 0.2135922321.4%
jalview.datamodel.DBRefEntry   jalview.datamodel.DBRefEntry 0.2123287621.2%
jalview.ws.rest.InputType   jalview.ws.rest.InputType 0.2056074720.6%
jalview.io.FileParse   jalview.io.FileParse 0.2033426220.3%
jalview.analysis.AAFrequency   jalview.analysis.AAFrequency 0.2025316520.3%
jalview.analysis.AnnotationSorter   jalview.analysis.AnnotationSorter 0.1970443319.7%
jalview.schemes.ColourSchemeProperty   jalview.schemes.ColourSchemeProperty 0.1944444519.4%
jalview.datamodel.Alignment   jalview.datamodel.Alignment 0.1927374319.3%
com.stevesoft.pat.patInt   com.stevesoft.pat.patInt 0.17517.5%
jalview.util.CaseInsensitiveString   jalview.util.CaseInsensitiveString 0.1739130517.4%
jalview.schemes.IdColourScheme   jalview.schemes.IdColourScheme 0.1739130517.4%
jalview.bin.Console   jalview.bin.Console 0.172413817.2%
jalview.log.JLogger   jalview.log.JLogger 0.1648351716.5%
jalview.ws.jws1.WS1Client   jalview.ws.jws1.WS1Client 0.1616%
jalview.gui.Desktop.MyDesktopManager   jalview.gui.Desktop.MyDesktopManager 0.1555555615.6%
jalview.viewmodel.seqfeatures.FeatureRendererSettings   jalview.viewmodel.seqfeatures.FeatureRendererSettings 0.1555555615.6%
jalview.renderer.ResidueShader   jalview.renderer.ResidueShader 0.1515%
jalview.schemes.TCoffeeColourScheme   jalview.schemes.TCoffeeColourScheme 0.1475409914.8%
jalview.gui.AlignFrame   jalview.gui.AlignFrame 0.1458258614.6%
jalview.gui.Desktop.MyDesktopPane   jalview.gui.Desktop.MyDesktopPane 0.1428571514.3%
jalview.io.AppletFormatAdapter   jalview.io.AppletFormatAdapter 0.12422360512.4%
jalview.ws.rest.params.SeqGroupIndexVector   jalview.ws.rest.params.SeqGroupIndexVector 0.12408759412.4%
jalview.io.FormatAdapter   jalview.io.FormatAdapter 0.1212%
jalview.util.ColorUtils   jalview.util.ColorUtils 0.1182795711.8%
jalview.schemes.Blosum62ColourScheme   jalview.schemes.Blosum62ColourScheme 0.1176470611.8%
jalview.analysis.scoremodels.ScoreModels   jalview.analysis.scoremodels.ScoreModels 0.11538461611.5%
jalview.ws.rest.RestClient   jalview.ws.rest.RestClient 0.11538461611.5%
jalview.ws.jws2.JabaParamStore   jalview.ws.jws2.JabaParamStore 0.11458333611.5%
jalview.util.ShortcutKeyMaskExWrapper   jalview.util.ShortcutKeyMaskExWrapper 0.1111111111.1%
jalview.gui.Desktop   jalview.gui.Desktop 0.10706150510.7%
jalview.log.JLoggerLog4j   jalview.log.JLoggerLog4j 0.10679611610.7%
jalview.ws.rest.params.AnnotationFile   jalview.ws.rest.params.AnnotationFile 0.10256410410.3%
com.stevesoft.pat.parsePerl   com.stevesoft.pat.parsePerl 0.098639469.9%
jalview.util.StringUtils   jalview.util.StringUtils 0.098461549.8%
jalview.gui.SplashScreen   jalview.gui.SplashScreen 0.0974025959.7%
jalview.workers.AlignCalcWorker   jalview.workers.AlignCalcWorker 0.09523819.5%
jalview.schemes.FeatureColour   jalview.schemes.FeatureColour 0.0947368449.5%
jalview.util.DBRefUtils   jalview.util.DBRefUtils 0.0936555869.4%
jalview.io.FileFormat   jalview.io.FileFormat 0.0930232559.3%
jalview.ws.dbsources.Xfam   jalview.ws.dbsources.Xfam 0.086956528.7%
jalview.ext.ensembl.EnsemblSequenceFetcher   jalview.ext.ensembl.EnsemblSequenceFetcher 0.0833333368.3%
jalview.gui.Console   jalview.gui.Console 0.082568818.3%
jalview.schemes.RNAHelicesColour   jalview.schemes.RNAHelicesColour 0.082191788.2%
jalview.gui.ProgressBar   jalview.gui.ProgressBar 0.081300818.1%
jalview.structure.StructureSelectionManager   jalview.structure.StructureSelectionManager 0.0786666657.9%
com.stevesoft.pat.FastMulti   com.stevesoft.pat.FastMulti 0.0740740757.4%
jalview.schemes.ColourSchemes   jalview.schemes.ColourSchemes 0.070175447%
jalview.gui.IdPanel   jalview.gui.IdPanel 0.067264576.7%
jalview.schemes.PIDColourScheme   jalview.schemes.PIDColourScheme 0.066666676.7%
jalview.gui.IdwidthAdjuster   jalview.gui.IdwidthAdjuster 0.0657894766.6%
com.stevesoft.pat.RegOpt   com.stevesoft.pat.RegOpt 0.06474826.5%
jalview.analysis.CrossRef   jalview.analysis.CrossRef 0.063524596.4%
jalview.analysis.scoremodels.ScoreMatrix   jalview.analysis.scoremodels.ScoreMatrix 0.0617283966.2%
ext.vamsas.ServiceHandle   ext.vamsas.ServiceHandle 0.061224496.1%
jalview.gui.AnnotationPanel   jalview.gui.AnnotationPanel 0.060924376.1%
jalview.gui.IdCanvas   jalview.gui.IdCanvas 0.059649126%
jalview.gui.ViewSelectionMenu   jalview.gui.ViewSelectionMenu 0.059405945.9%
jalview.ws.seqfetcher.ASequenceFetcher   jalview.ws.seqfetcher.ASequenceFetcher 0.0577777775.8%
jalview.util.Platform   jalview.util.Platform 0.0566037745.7%
jalview.ws.seqfetcher.DbSourceProxyImpl   jalview.ws.seqfetcher.DbSourceProxyImpl 0.0540540555.4%
jalview.ws.jws1.Discoverer   jalview.ws.jws1.Discoverer 0.0512820525.1%
jalview.bin.Cache   jalview.bin.Cache 0.0509641885.1%
jalview.analysis.GeneticCodes   jalview.analysis.GeneticCodes 0.0496894425%
jalview.gui.WsParamSetManager   jalview.gui.WsParamSetManager 0.0429447854.3%
jalview.xml.binding.jalview.ObjectFactory   jalview.xml.binding.jalview.ObjectFactory 0.0427350444.3%
jalview.ws.dbsources.Pdb   jalview.ws.dbsources.Pdb 0.042553194.3%
jalview.gui.StructureViewerBase   jalview.gui.StructureViewerBase 0.0382916073.8%
jalview.gui.AppJmolBinding   jalview.gui.AppJmolBinding 0.0373831763.7%
jalview.datamodel.ColumnSelection.IntList   jalview.datamodel.ColumnSelection.IntList 0.0373831763.7%
jalview.gui.ScalePanel   jalview.gui.ScalePanel 0.035156253.5%
jalview.ws.jws1.JPredClient   jalview.ws.jws1.JPredClient 0.0310559013.1%
jalview.gui.SeqCanvas   jalview.gui.SeqCanvas 0.0290581162.9%
com.stevesoft.pat.RegRes   com.stevesoft.pat.RegRes 0.0289855082.9%
jalview.datamodel.HiddenSequences   jalview.datamodel.HiddenSequences 0.027397262.7%
jalview.renderer.ResidueColourFinder   jalview.renderer.ResidueColourFinder 0.0238095242.4%
jalview.datamodel.HiddenColumns   jalview.datamodel.HiddenColumns 0.0188679251.9%
jalview.schemes.ClustalxColourScheme   jalview.schemes.ClustalxColourScheme 0.0169491531.7%
jalview.datamodel.HiddenColumnsCursor   jalview.datamodel.HiddenColumnsCursor 0.0156251.6%
jalview.ws.dbsources.Uniprot   jalview.ws.dbsources.Uniprot 0.0155642021.6%
mc_view.PDBfile   mc_view.PDBfile 0.0150375941.5%
jalview.gui.SequenceRenderer   jalview.gui.SequenceRenderer 0.0144230771.4%
jalview.controller.AlignViewController   jalview.controller.AlignViewController 0.0136518771.4%
jalview.datamodel.SearchResults   jalview.datamodel.SearchResults 0.0128205131.3%
jalview.analysis.AlignSeq   jalview.analysis.AlignSeq 0.0128205131.3%
jalview.gui.SeqPanel   jalview.gui.SeqPanel 0.0125412541.3%
jalview.io.SequenceAnnotationReport   jalview.io.SequenceAnnotationReport 0.0122699381.2%
jalview.bin.Jalview   jalview.bin.Jalview 0.0118829981.2%
jalview.renderer.AnnotationRenderer   jalview.renderer.AnnotationRenderer 0.0117753621.2%
jalview.util.HttpUtils   jalview.util.HttpUtils 0.01169590651.2%
jalview.gui.AnnotationLabels   jalview.gui.AnnotationLabels 0.01150747951.2%
jalview.gui.BlogReader   jalview.gui.BlogReader 0.0110497241.1%
jalview.structures.models.AAStructureBindingModel   jalview.structures.models.AAStructureBindingModel 0.0104772991%
jalview.gui.SequenceFetcher   jalview.gui.SequenceFetcher 0.0089285720.9%
jalview.bin.argparser.BootstrapArgs   jalview.bin.argparser.BootstrapArgs 0.0082644620.8%
jalview.ext.ensembl.EnsemblGene   jalview.ext.ensembl.EnsemblGene 0.0081632650.8%
jalview.analysis.AlignmentUtils   jalview.analysis.AlignmentUtils 0.0080409360.8%
jalview.renderer.seqfeatures.FeatureRenderer   jalview.renderer.seqfeatures.FeatureRenderer 0.007547170.8%
jalview.gui.QuitHandler   jalview.gui.QuitHandler 0.00722021660.7%
jalview.ext.jmol.JalviewJmolBinding   jalview.ext.jmol.JalviewJmolBinding 0.0040485830.4%
jalview.datamodel.ColumnSelection   jalview.datamodel.ColumnSelection 0.00343642620.3%
com.stevesoft.pat.CaseMgr   com.stevesoft.pat.CaseMgr 0.00278551530.3%
jalview.schemes.ResidueProperties   jalview.schemes.ResidueProperties 0.00105042020.1%