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Coverage Report

Class AlignmentUtilsTests

 
AlignmentUtilsTests 4444 00 00 0.033
1.0100%
 
AlignmentUtilsTests.testAlignSequenceAs_withMapping_withUnmappedProteinAlignmentUtilsTests.testAlignSequenceAs_withMapping_withUnmappedProtein 173279442772528 Nov 11:47:07 1PASS 0.00  
AlignmentUtilsTests.testSecondaryStructurePresentAndSourcesAlignmentUtilsTests.testSecondaryStructurePresentAndSources 173279442775228 Nov 11:47:07 1PASS 0.00  
AlignmentUtilsTests.testSecondaryStructurePresentAndSourcesAlignmentUtilsTests.testSecondaryStructurePresentAndSources 173279442775328 Nov 11:47:07 1PASS 0.00  
AlignmentUtilsTests.testFindCdsPositionsAlignmentUtilsTests.testFindCdsPositions 173279442773628 Nov 11:47:07 1PASS 0.00  
AlignmentUtilsTests.testAlignSequenceAs_mappedProteinProteinAlignmentUtilsTests.testAlignSequenceAs_mappedProteinProtein 173279442772328 Nov 11:47:07 1PASS 0.00  
AlignmentUtilsTests.testGetSequencesByNameAlignmentUtilsTests.testGetSequencesByName 173279442773728 Nov 11:47:07 1PASS 0.0010.001  
AlignmentUtilsTests.testAlignProteinAsDnaAlignmentUtilsTests.testAlignProteinAsDna 173279442771928 Nov 11:47:07 1PASS 0.0020.002  
AlignmentUtilsTests.testTransferFeatures_withOmitAlignmentUtilsTests.testTransferFeatures_withOmit 173279442775528 Nov 11:47:07 1PASS 0.00  
AlignmentUtilsTests.testTransferFeatures_withSelectAlignmentUtilsTests.testTransferFeatures_withSelect 173279442775728 Nov 11:47:07 1PASS 0.00  
AlignmentUtilsTests.testMapProteinAlignmentToCdna_withStartAndStopCodonsAlignmentUtilsTests.testMapProteinAlignmentToCdna_withStartAndStopCodons 173279442774928 Nov 11:47:07 1PASS 0.0010.001  
AlignmentUtilsTests.testMakeCdsAlignment_multipleProteinsAlignmentUtilsTests.testMakeCdsAlignment_multipleProteins 173279442774428 Nov 11:47:07 1PASS 0.0010.001  
AlignmentUtilsTests.testHaveCrossRefAlignmentUtilsTests.testHaveCrossRef 173279442773928 Nov 11:47:07 1PASS 0.00  
AlignmentUtilsTests.testAlignSequenceAs_keepIntronGapsOnlyAlignmentUtilsTests.testAlignSequenceAs_keepIntronGapsOnly 173279442772228 Nov 11:47:07 1PASS 0.00  
AlignmentUtilsTests.testAlignProteinAsDna_incompleteStartCodonAlignmentUtilsTests.testAlignProteinAsDna_incompleteStartCodon 173279442772128 Nov 11:47:07 1PASS 0.0010.001  
AlignmentUtilsTests.testAlignSequenceAs_withTrailingPeptideAlignmentUtilsTests.testAlignSequenceAs_withTrailingPeptide 173279442772528 Nov 11:47:07 1PASS 0.0010.001  
AlignmentUtilsTests.testHasCrossRefAlignmentUtilsTests.testHasCrossRef 173279442773828 Nov 11:47:07 1PASS 0.00  
AlignmentUtilsTests.testMapProteinAlignmentToCdna_withXrefsAlignmentUtilsTests.testMapProteinAlignmentToCdna_withXrefs 173279442775028 Nov 11:47:07 1PASS 0.0010.001  
AlignmentUtilsTests.testFindCdsPositions_fivePrimeIncompleteAlignmentUtilsTests.testFindCdsPositions_fivePrimeIncomplete 173279442773728 Nov 11:47:07 1PASS 0.00  
AlignmentUtilsTests.testTransferFeaturesAlignmentUtilsTests.testTransferFeatures 173279442775428 Nov 11:47:07 1PASS 0.0010.001  
AlignmentUtilsTests.testAlignAs_alternateTranscriptsUngappedAlignmentUtilsTests.testAlignAs_alternateTranscriptsUngapped 173279442771828 Nov 11:47:07 1PASS 0.00  
AlignmentUtilsTests.testMapProteinAlignmentToCdna_noXrefsAlignmentUtilsTests.testMapProteinAlignmentToCdna_noXrefs 173279442774828 Nov 11:47:07 1PASS 0.00  
AlignmentUtilsTests.testExpandContext_annotationAlignmentUtilsTests.testExpandContext_annotation 173279442773228 Nov 11:47:07 1PASS 0.0010.001  
AlignmentUtilsTests.testShowOrHideSequenceAnnotationsAlignmentUtilsTests.testShowOrHideSequenceAnnotations 173279442775428 Nov 11:47:07 1PASS 0.00  
AlignmentUtilsTests.testAddMappedPositionsAlignmentUtilsTests.testAddMappedPositions 173279442770628 Nov 11:47:07 1PASS 0.0010.001  
AlignmentUtilsTests.testAlignAsSameSequencesAlignmentUtilsTests.testAlignAsSameSequences 173279442771228 Nov 11:47:07 1PASS 0.0040.004  
AlignmentUtilsTests.testSecondaryStructurePresentAndSourcesAlignmentUtilsTests.testSecondaryStructurePresentAndSources 173279442775128 Nov 11:47:07 1PASS 0.00  
AlignmentUtilsTests.testTransferGeneLociAlignmentUtilsTests.testTransferGeneLoci 173279442775828 Nov 11:47:07 1PASS 0.0010.001  
AlignmentUtilsTests.testMapProteinAlignmentToCdna_prioritiseXrefsAlignmentUtilsTests.testMapProteinAlignmentToCdna_prioritiseXrefs 173279442774928 Nov 11:47:07 1PASS 0.00  
AlignmentUtilsTests.testMakeCdsAlignment_filterProductsAlignmentUtilsTests.testMakeCdsAlignment_filterProducts 173279442774328 Nov 11:47:07 1PASS 0.0010.001  
AlignmentUtilsTests.testMakeCdsAlignment_alternativeTranscriptsAlignmentUtilsTests.testMakeCdsAlignment_alternativeTranscripts 173279442774228 Nov 11:47:07 1PASS 0.0010.001  
AlignmentUtilsTests.testMakeCdsAlignmentAlignmentUtilsTests.testMakeCdsAlignment 173279442774028 Nov 11:47:07 1PASS 0.0020.002  
AlignmentUtilsTests.testIsMappableAlignmentUtilsTests.testIsMappable 173279442773928 Nov 11:47:07 1PASS 0.0010.001  
AlignmentUtilsTests.testFindCdsForProtein_noUTRAlignmentUtilsTests.testFindCdsForProtein_noUTR 173279442773428 Nov 11:47:07 1PASS 0.0010.001  
AlignmentUtilsTests.testAddReferenceAnnotationsAlignmentUtilsTests.testAddReferenceAnnotations 173279442770828 Nov 11:47:07 1PASS 0.0010.001  
AlignmentUtilsTests.testTranslatesAsAlignmentUtilsTests.testTranslatesAs 173279442776028 Nov 11:47:07 1PASS 0.00  
AlignmentUtilsTests.testAlignAsSameSequencesMultipleSubSeqAlignmentUtilsTests.testAlignAsSameSequencesMultipleSubSeq 173279442771728 Nov 11:47:07 1PASS 0.00  
AlignmentUtilsTests.testExpandContextAlignmentUtilsTests.testExpandContext 173279442772628 Nov 11:47:07 1PASS 0.0060.006  
AlignmentUtilsTests.testMapCdnaToProtein_forSubsequenceAlignmentUtilsTests.testMapCdnaToProtein_forSubsequence 173279442774528 Nov 11:47:07 1PASS 0.0010.001  
AlignmentUtilsTests.testMapCdsToProteinAlignmentUtilsTests.testMapCdsToProtein 173279442774628 Nov 11:47:07 1PASS 0.0010.001  
AlignmentUtilsTests.testAddMappedPositions_withStopCodonAlignmentUtilsTests.testAddMappedPositions_withStopCodon 173279442770728 Nov 11:47:07 1PASS 0.00  
AlignmentUtilsTests.testFindCdsForProteinAlignmentUtilsTests.testFindCdsForProtein 173279442773328 Nov 11:47:07 1PASS 0.00  
AlignmentUtilsTests.testAlignSequenceAs_withMapping_withIntronsAlignmentUtilsTests.testAlignSequenceAs_withMapping_withIntrons 173279442772428 Nov 11:47:07 1PASS 0.00  
AlignmentUtilsTests.testAlignSequenceAs_withMapping_noIntronsAlignmentUtilsTests.testAlignSequenceAs_withMapping_noIntrons 173279442772328 Nov 11:47:07 1PASS 0.0010.001  
AlignmentUtilsTests.testAddReferenceContactMapAlignmentUtilsTests.testAddReferenceContactMap 173279442771028 Nov 11:47:07 1PASS 0.0010.001