Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
EnsemblData	29	4	1	1.0100%	Show methods

Class EnsemblData

Class EnsemblData	Line # 29	Total Statements 4	Complexity 1	TOTAL Coverage 1.0100%
EnsemblData(String,String)   EnsemblData(String,String)	8383	4.04	1.01	1.0 1.0100%

 

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.ext.ensembl;
22
23		/**
24		* A data class to model the data and rest version of one Ensembl domain,
25		* currently for rest.ensembl.org and rest.ensemblgenomes.org
26		*
27		* @author gmcarstairs
28		*/
		100% Uncovered Elements: 0 (5) Complexity: 1 Complexity Density: 0.25
29		class EnsemblData
30		{
31		/*
32		* The http domain this object is holding data values for
33		*/
34		String domain;
35
36		/*
37		* The latest version Jalview has tested for, e.g. "4.5"; a minor version change should be
38		* ok, a major version change may break stuff
39		*/
40		String expectedRestVersion;
41
42		/*
43		* Major / minor / point version e.g. "4.5.1"
44		* @see http://rest.ensembl.org/info/rest/?content-type=application/json
45		*/
46		String restVersion;
47
48		/*
49		* data version
50		* @see http://rest.ensembl.org/info/data/?content-type=application/json
51		*/
52		String dataVersion;
53
54		/*
55		* true when http://rest.ensembl.org/info/ping/?content-type=application/json
56		* returns response code 200 and not {"error":"Database is unavailable"}
57		*/
58		boolean restAvailable;
59
60		/*
61		* absolute time when availability was last checked
62		*/
63		long lastAvailableCheckTime;
64
65		/*
66		* absolute time when version numbers were last checked
67		*/
68		long lastVersionCheckTime;
69
70		// flag set to true if REST major version is not the one expected
71		boolean restMajorVersionMismatch;
72
73		/*
74		* absolute time to wait till if we overloaded the REST service
75		*/
76		long retryAfter;
77
78		/**
79		* Constructor given expected REST version number e.g 4.5 or 3.4.3
80		*
81		* @param restExpected
82		*/
		100% Uncovered Elements: 0 (4) Complexity: 1 Complexity Density: 0.25
83	2	EnsemblData(String theDomain, String restExpected)...
84		{
85	2	domain = theDomain;
86	2	expectedRestVersion = restExpected;
87	2	lastAvailableCheckTime = -1;
88	2	lastVersionCheckTime = -1;
89		}
90
91		}