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package jalview.viewmodel.styles; |
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import java.awt.Color; |
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import jalview.api.ViewStyleI; |
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@author |
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| 100% |
Uncovered Elements: 0 (256) |
Complexity: 93 |
Complexity Density: 0.57 |
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public class ViewStyle implements ViewStyleI |
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{ |
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private boolean abovePIDThreshold = false; |
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int charHeight; |
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int charWidth; |
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int idWidth = -1; |
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private boolean colourAppliesToAllGroups; |
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boolean centreColumnLabels = false; |
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private boolean showdbrefs; |
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private boolean shownpfeats; |
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private boolean colourByReferenceSeq = false; |
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boolean conservationColourSelected = false; |
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private boolean displayReferenceSeq = false; |
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private int increment; |
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boolean renderGaps = true; |
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private boolean rightAlignIds = false; |
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boolean scaleAboveWrapped = false; |
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boolean scaleLeftWrapped = true; |
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boolean scaleRightWrapped = true; |
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boolean seqNameItalics; |
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private boolean showAnnotation = true; |
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boolean showBoxes = true; |
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boolean showColourText = false; |
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boolean showHiddenMarkers = true; |
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boolean showJVSuffix = true; |
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boolean showSeqFeaturesHeight; |
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boolean showSequenceFeatures = false; |
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boolean showText = true; |
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protected boolean showUnconserved = false; |
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Color textColour = Color.black; |
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Color textColour2 = Color.white; |
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int threshold; |
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int thresholdTextColour = 0; |
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boolean upperCasebold = false; |
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private String fontName; |
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private int fontSize; |
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private boolean scaleProteinAsCdna = true; |
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private boolean proteinFontAsCdna = true; |
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@param |
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| 100% |
Uncovered Elements: 0 (43) |
Complexity: 1 |
Complexity Density: 0.02 |
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public ViewStyle(ViewStyleI vs)... |
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{ |
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setAbovePIDThreshold(vs.getAbovePIDThreshold()); |
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setCentreColumnLabels(vs.isCentreColumnLabels()); |
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setCharHeight(vs.getCharHeight()); |
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setCharWidth(vs.getCharWidth()); |
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setColourAppliesToAllGroups(vs.getColourAppliesToAllGroups()); |
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setColourByReferenceSeq(vs.isColourByReferenceSeq()); |
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setColourText(vs.getColourText()); |
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setConservationColourSelected(vs.isConservationColourSelected()); |
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setConservationSelected(vs.getConservationSelected()); |
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setDisplayReferenceSeq(vs.isDisplayReferenceSeq()); |
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setFontName(vs.getFontName()); |
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setFontSize(vs.getFontSize()); |
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setFontStyle(vs.getFontStyle()); |
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setIdWidth(vs.getIdWidth()); |
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setIncrement(vs.getIncrement()); |
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setRenderGaps(vs.isRenderGaps()); |
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setRightAlignIds(vs.isRightAlignIds()); |
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setScaleAboveWrapped(vs.getScaleAboveWrapped()); |
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setScaleLeftWrapped(vs.getScaleLeftWrapped()); |
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setScaleProteinAsCdna(vs.isScaleProteinAsCdna()); |
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setProteinFontAsCdna(vs.isProteinFontAsCdna()); |
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setScaleRightWrapped(vs.getScaleRightWrapped()); |
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setSeqNameItalics(vs.isSeqNameItalics()); |
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setShowAnnotation(vs.isShowAnnotation()); |
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setShowBoxes(vs.getShowBoxes()); |
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setShowColourText(vs.isShowColourText()); |
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setShowDBRefs(vs.isShowDBRefs()); |
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setShowHiddenMarkers(vs.getShowHiddenMarkers()); |
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setShowJVSuffix(vs.getShowJVSuffix()); |
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setShowNPFeats(vs.isShowNPFeats()); |
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setShowSequenceFeaturesHeight(vs.isShowSequenceFeaturesHeight()); |
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setShowSequenceFeatures(vs.isShowSequenceFeatures()); |
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setShowComplementFeatures(vs.isShowComplementFeatures()); |
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setShowComplementFeaturesOnTop(vs.isShowComplementFeaturesOnTop()); |
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setShowText(vs.getShowText()); |
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setShowUnconserved(vs.getShowUnconserved()); |
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setTextColour(vs.getTextColour()); |
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setTextColour2(vs.getTextColour2()); |
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setThreshold(vs.getThreshold()); |
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setThresholdTextColour(vs.getThresholdTextColour()); |
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setUpperCasebold(vs.isUpperCasebold()); |
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setWrapAlignment(vs.getWrapAlignment()); |
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setWrappedWidth(vs.getWrappedWidth()); |
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} |
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| - |
Uncovered Elements: 0 (0) |
Complexity: 1 |
Complexity Density: - |
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public ViewStyle()... |
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{ |
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} |
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| 100% |
Uncovered Elements: 0 (10) |
Complexity: 3 |
Complexity Density: 0.38 |
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@Override... |
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public boolean equals(Object other) |
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if (other == null || !(other instanceof ViewStyle)) |
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{ |
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return false; |
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} |
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ViewStyle vs = (ViewStyle) other; |
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boolean match = (getAbovePIDThreshold() == vs.getAbovePIDThreshold() |
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&& isCentreColumnLabels() == vs.isCentreColumnLabels() |
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&& getCharHeight() == vs.getCharHeight() |
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&& getCharWidth() == vs.getCharWidth() |
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&& getColourAppliesToAllGroups() == vs |
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.getColourAppliesToAllGroups() |
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&& isColourByReferenceSeq() == vs.isColourByReferenceSeq() |
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&& getColourText() == vs.getColourText() |
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&& isConservationColourSelected() == vs |
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.isConservationColourSelected() |
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&& getConservationSelected() == vs.getConservationSelected() |
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&& isDisplayReferenceSeq() == vs.isDisplayReferenceSeq() |
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&& getFontSize() == vs.getFontSize() |
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&& getFontStyle() == vs.getFontStyle() |
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&& getIdWidth() == vs.getIdWidth() |
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&& getIncrement() == vs.getIncrement() |
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&& isRenderGaps() == vs.isRenderGaps() |
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&& isRightAlignIds() == vs.isRightAlignIds() |
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&& getScaleAboveWrapped() == vs.getScaleAboveWrapped() |
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&& getScaleLeftWrapped() == vs.getScaleLeftWrapped() |
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&& isScaleProteinAsCdna() == vs.isScaleProteinAsCdna() |
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&& isProteinFontAsCdna() == vs.isProteinFontAsCdna() |
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&& getScaleRightWrapped() == vs.getScaleRightWrapped() |
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&& isSeqNameItalics() == vs.isSeqNameItalics() |
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&& isShowAnnotation() == vs.isShowAnnotation() |
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&& getShowBoxes() == vs.getShowBoxes() |
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&& isShowColourText() == vs.isShowColourText() |
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&& isShowDBRefs() == vs.isShowDBRefs() |
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&& getShowHiddenMarkers() == vs.getShowHiddenMarkers() |
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&& getShowJVSuffix() == vs.getShowJVSuffix() |
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&& isShowNPFeats() == vs.isShowNPFeats() |
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&& isShowSequenceFeaturesHeight() == vs |
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.isShowSequenceFeaturesHeight() |
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&& isShowSequenceFeatures() == vs.isShowSequenceFeatures() |
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&& isShowComplementFeatures() == vs.isShowComplementFeatures() |
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&& isShowComplementFeaturesOnTop() == vs |
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.isShowComplementFeaturesOnTop() |
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&& getShowText() == vs.getShowText() |
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&& getShowUnconserved() == vs.getShowUnconserved() |
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&& getThreshold() == vs.getThreshold() |
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&& getThresholdTextColour() == vs.getThresholdTextColour() |
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&& isUpperCasebold() == vs.isUpperCasebold() |
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&& getWrapAlignment() == vs.getWrapAlignment() |
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&& getWrappedWidth() == vs.getWrappedWidth()); |
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match = match && String.valueOf(getFontName()) |
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.equals(String.valueOf(vs.getFontName())); |
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match = match && String.valueOf(getTextColour()) |
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.equals(String.valueOf(vs.getTextColour())); |
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match = match && String.valueOf(getTextColour2()) |
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.equals(String.valueOf(vs.getTextColour2())); |
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return match; |
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} |
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307 |
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| 100% |
Uncovered Elements: 0 (25) |
Complexity: 1 |
Complexity Density: 0.04 |
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84 |
@Override... |
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public int hashCode() |
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{ |
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int hash = 0; |
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int m = 1; |
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hash += m++ * Boolean.valueOf(this.abovePIDThreshold).hashCode(); |
318 |
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hash += m++ * Boolean.valueOf(this.centreColumnLabels).hashCode(); |
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hash += m++ * Boolean.valueOf(this.colourAppliesToAllGroups).hashCode(); |
320 |
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hash += m++ * Boolean.valueOf(this.displayReferenceSeq).hashCode(); |
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hash += m++ * Boolean.valueOf(this.renderGaps).hashCode(); |
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hash += m++ * Boolean.valueOf(this.rightAlignIds).hashCode(); |
323 |
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hash += m++ * Boolean.valueOf(this.scaleProteinAsCdna).hashCode(); |
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hash += m++ * Boolean.valueOf(this.scaleRightWrapped).hashCode(); |
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hash += m++ * Boolean.valueOf(this.seqNameItalics).hashCode(); |
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hash += m++ * Boolean.valueOf(this.showAnnotation).hashCode(); |
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hash += m++ * Boolean.valueOf(this.showBoxes).hashCode(); |
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hash += m++ * Boolean.valueOf(this.showdbrefs).hashCode(); |
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hash += m++ * Boolean.valueOf(this.showJVSuffix).hashCode(); |
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hash += m++ * Boolean.valueOf(this.showSequenceFeatures).hashCode(); |
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hash += m++ * Boolean.valueOf(this.showUnconserved).hashCode(); |
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hash += m++ * Boolean.valueOf(this.wrapAlignment).hashCode(); |
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hash += m++ * this.charHeight; |
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hash += m++ * this.charWidth; |
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hash += m++ * fontSize; |
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hash += m++ * fontStyle; |
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hash += m++ * idWidth; |
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hash += String.valueOf(this.fontName).hashCode(); |
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return hash; |
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} |
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@return |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
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345 |
250 |
@Override... |
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public boolean isUpperCasebold() |
347 |
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{ |
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return upperCasebold; |
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} |
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351 |
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352 |
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@param |
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354 |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
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232 |
@Override... |
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public void setUpperCasebold(boolean upperCasebold) |
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{ |
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this.upperCasebold = upperCasebold; |
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} |
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boolean wrapAlignment = false; |
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int wrappedWidth; |
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private int fontStyle; |
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private boolean showComplementFeatures; |
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private boolean showComplementFeaturesOnTop; |
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@return |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
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1202 |
@Override... |
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public boolean getAbovePIDThreshold() |
384 |
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{ |
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1202 |
return abovePIDThreshold; |
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} |
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390 |
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@return |
392 |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
393 |
124358 |
@Override... |
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public int getCharHeight() |
395 |
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{ |
396 |
124358 |
return charHeight; |
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} |
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@return |
403 |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
404 |
1765357 |
@Override... |
405 |
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public int getCharWidth() |
406 |
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{ |
407 |
1765357 |
return charWidth; |
408 |
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} |
409 |
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410 |
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411 |
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412 |
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413 |
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@return |
414 |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
415 |
1274 |
@Override... |
416 |
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public boolean getColourAppliesToAllGroups() |
417 |
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{ |
418 |
1274 |
return colourAppliesToAllGroups; |
419 |
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} |
420 |
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421 |
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422 |
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423 |
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424 |
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@return |
425 |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
426 |
425807 |
@Override... |
427 |
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public boolean getColourText() |
428 |
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{ |
429 |
425807 |
return showColourText; |
430 |
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} |
431 |
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432 |
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433 |
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434 |
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435 |
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@return |
436 |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
437 |
1344 |
@Override... |
438 |
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public boolean getConservationSelected() |
439 |
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{ |
440 |
1344 |
return conservationColourSelected; |
441 |
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} |
442 |
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443 |
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444 |
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445 |
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446 |
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@return |
447 |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
448 |
296 |
@Override... |
449 |
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public int getIncrement() |
450 |
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{ |
451 |
296 |
return increment; |
452 |
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} |
453 |
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454 |
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455 |
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456 |
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457 |
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@return |
458 |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
459 |
1053 |
@Override... |
460 |
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public boolean getScaleAboveWrapped() |
461 |
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{ |
462 |
1053 |
return scaleAboveWrapped; |
463 |
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} |
464 |
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465 |
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466 |
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467 |
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468 |
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@return |
469 |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
470 |
1401 |
@Override... |
471 |
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public boolean getScaleLeftWrapped() |
472 |
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{ |
473 |
1401 |
return scaleLeftWrapped; |
474 |
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} |
475 |
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476 |
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477 |
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478 |
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479 |
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@return |
480 |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
481 |
2066 |
@Override... |
482 |
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public boolean getScaleRightWrapped() |
483 |
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{ |
484 |
2066 |
return scaleRightWrapped; |
485 |
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} |
486 |
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487 |
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488 |
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489 |
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490 |
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@return |
491 |
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| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
492 |
459138 |
@Override... |
493 |
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public boolean getShowBoxes() |
494 |
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{ |
495 |
459138 |
return showBoxes; |
496 |
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} |
497 |
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|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
498 |
7642 |
@Override... |
499 |
|
public boolean getShowHiddenMarkers() |
500 |
|
{ |
501 |
7642 |
return showHiddenMarkers; |
502 |
|
} |
503 |
|
|
504 |
|
|
505 |
|
|
506 |
|
|
507 |
|
@return |
508 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
509 |
58803 |
@Override... |
510 |
|
public boolean getShowJVSuffix() |
511 |
|
{ |
512 |
58803 |
return showJVSuffix; |
513 |
|
} |
514 |
|
|
515 |
|
|
516 |
|
|
517 |
|
|
518 |
|
@return |
519 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
520 |
426429 |
@Override... |
521 |
|
public boolean getShowText() |
522 |
|
{ |
523 |
426429 |
return showText; |
524 |
|
} |
525 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
526 |
425141 |
@Override... |
527 |
|
public boolean getShowUnconserved() |
528 |
|
{ |
529 |
425141 |
return showUnconserved; |
530 |
|
} |
531 |
|
|
532 |
|
|
533 |
|
@return |
534 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
535 |
857876 |
@Override... |
536 |
|
public Color getTextColour() |
537 |
|
{ |
538 |
857876 |
return textColour; |
539 |
|
} |
540 |
|
|
541 |
|
|
542 |
|
@return |
543 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
544 |
286 |
@Override... |
545 |
|
public Color getTextColour2() |
546 |
|
{ |
547 |
286 |
return textColour2; |
548 |
|
} |
549 |
|
|
550 |
|
|
551 |
|
|
552 |
|
|
553 |
|
@return |
554 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
555 |
254 |
@Override... |
556 |
|
public int getThreshold() |
557 |
|
{ |
558 |
254 |
return threshold; |
559 |
|
} |
560 |
|
|
561 |
|
|
562 |
|
@return |
563 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
564 |
425751 |
@Override... |
565 |
|
public int getThresholdTextColour() |
566 |
|
{ |
567 |
425751 |
return thresholdTextColour; |
568 |
|
} |
569 |
|
|
570 |
|
|
571 |
|
|
572 |
|
|
573 |
|
@return |
574 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
575 |
34085 |
@Override... |
576 |
|
public boolean getWrapAlignment() |
577 |
|
{ |
578 |
34085 |
return wrapAlignment; |
579 |
|
} |
580 |
|
|
581 |
|
|
582 |
|
|
583 |
|
|
584 |
|
@return |
585 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
586 |
248 |
@Override... |
587 |
|
public int getWrappedWidth() |
588 |
|
{ |
589 |
248 |
return wrappedWidth; |
590 |
|
} |
591 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
592 |
315 |
@Override... |
593 |
|
public boolean isColourByReferenceSeq() |
594 |
|
{ |
595 |
315 |
return colourByReferenceSeq; |
596 |
|
} |
597 |
|
|
598 |
|
|
599 |
|
@return |
600 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
601 |
392 |
@Override... |
602 |
|
public boolean isConservationColourSelected() |
603 |
|
{ |
604 |
392 |
return conservationColourSelected; |
605 |
|
} |
606 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
607 |
599 |
@Override... |
608 |
|
public boolean isDisplayReferenceSeq() |
609 |
|
{ |
610 |
599 |
return displayReferenceSeq; |
611 |
|
} |
612 |
|
|
613 |
|
|
614 |
|
@return |
615 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
616 |
4113 |
@Override... |
617 |
|
public boolean isRenderGaps() |
618 |
|
{ |
619 |
4113 |
return renderGaps; |
620 |
|
} |
621 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
622 |
21749 |
@Override... |
623 |
|
public boolean isRightAlignIds() |
624 |
|
{ |
625 |
21749 |
return rightAlignIds; |
626 |
|
} |
627 |
|
|
628 |
|
|
629 |
|
@return |
630 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
631 |
3850 |
@Override... |
632 |
|
public boolean isSeqNameItalics() |
633 |
|
{ |
634 |
3850 |
return seqNameItalics; |
635 |
|
} |
636 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
637 |
4821 |
@Override... |
638 |
|
public boolean isShowAnnotation() |
639 |
|
{ |
640 |
4821 |
return showAnnotation; |
641 |
|
} |
642 |
|
|
643 |
|
|
644 |
|
@return |
645 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
646 |
946 |
@Override... |
647 |
|
public boolean isShowColourText() |
648 |
|
{ |
649 |
946 |
return showColourText; |
650 |
|
} |
651 |
|
|
652 |
|
|
653 |
|
@return |
654 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
655 |
266 |
@Override... |
656 |
|
public boolean isShowSequenceFeaturesHeight() |
657 |
|
{ |
658 |
266 |
return showSeqFeaturesHeight; |
659 |
|
} |
660 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
661 |
401095 |
@Override... |
662 |
|
public boolean isShowSequenceFeatures() |
663 |
|
{ |
664 |
401121 |
return showSequenceFeatures; |
665 |
|
} |
666 |
|
|
667 |
|
|
668 |
|
|
669 |
|
|
670 |
|
|
671 |
|
@param |
672 |
|
|
673 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
674 |
326 |
@Override... |
675 |
|
public void setAbovePIDThreshold(boolean b) |
676 |
|
{ |
677 |
326 |
abovePIDThreshold = b; |
678 |
|
} |
679 |
|
|
680 |
|
|
681 |
|
|
682 |
|
|
683 |
|
@param |
684 |
|
|
685 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
686 |
828 |
@Override... |
687 |
|
public void setCharHeight(int h) |
688 |
|
{ |
689 |
828 |
this.charHeight = h; |
690 |
|
} |
691 |
|
|
692 |
|
|
693 |
|
|
694 |
|
|
695 |
|
@param |
696 |
|
|
697 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
698 |
831 |
@Override... |
699 |
|
public void setCharWidth(int w) |
700 |
|
{ |
701 |
831 |
this.charWidth = w; |
702 |
|
} |
703 |
|
|
704 |
|
|
705 |
|
@param |
706 |
|
|
707 |
|
|
708 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
709 |
925 |
@Override... |
710 |
|
public void setColourAppliesToAllGroups(boolean b) |
711 |
|
{ |
712 |
925 |
colourAppliesToAllGroups = b; |
713 |
|
} |
714 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
715 |
242 |
@Override... |
716 |
|
public void setColourByReferenceSeq(boolean colourByReferenceSeq) |
717 |
|
{ |
718 |
242 |
this.colourByReferenceSeq = colourByReferenceSeq; |
719 |
|
} |
720 |
|
|
721 |
|
|
722 |
|
|
723 |
|
|
724 |
|
@param |
725 |
|
|
726 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
727 |
317 |
@Override... |
728 |
|
public void setColourText(boolean state) |
729 |
|
{ |
730 |
317 |
showColourText = state; |
731 |
|
} |
732 |
|
|
733 |
|
|
734 |
|
@param |
735 |
|
|
736 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
737 |
232 |
@Override... |
738 |
|
public void setConservationColourSelected( |
739 |
|
boolean conservationColourSelected) |
740 |
|
{ |
741 |
232 |
this.conservationColourSelected = conservationColourSelected; |
742 |
|
} |
743 |
|
|
744 |
|
|
745 |
|
|
746 |
|
|
747 |
|
@param |
748 |
|
|
749 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
750 |
325 |
@Override... |
751 |
|
public void setConservationSelected(boolean b) |
752 |
|
{ |
753 |
325 |
conservationColourSelected = b; |
754 |
|
} |
755 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
756 |
242 |
@Override... |
757 |
|
public void setDisplayReferenceSeq(boolean displayReferenceSeq) |
758 |
|
{ |
759 |
242 |
this.displayReferenceSeq = displayReferenceSeq; |
760 |
|
} |
761 |
|
|
762 |
|
|
763 |
|
|
764 |
|
@param |
765 |
|
|
766 |
|
|
767 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
768 |
317 |
@Override... |
769 |
|
public void setIncrement(int inc) |
770 |
|
{ |
771 |
317 |
increment = inc; |
772 |
|
} |
773 |
|
|
774 |
|
|
775 |
|
|
776 |
|
|
777 |
|
@param |
778 |
|
|
779 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
780 |
317 |
@Override... |
781 |
|
public void setRenderGaps(boolean state) |
782 |
|
{ |
783 |
317 |
renderGaps = state; |
784 |
|
} |
785 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
786 |
825 |
@Override... |
787 |
|
public void setRightAlignIds(boolean rightAlignIds) |
788 |
|
{ |
789 |
825 |
this.rightAlignIds = rightAlignIds; |
790 |
|
} |
791 |
|
|
792 |
|
|
793 |
|
|
794 |
|
|
795 |
|
@param |
796 |
|
|
797 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
798 |
241 |
@Override... |
799 |
|
public void setScaleAboveWrapped(boolean b) |
800 |
|
{ |
801 |
241 |
scaleAboveWrapped = b; |
802 |
|
} |
803 |
|
|
804 |
|
|
805 |
|
|
806 |
|
|
807 |
|
@param |
808 |
|
|
809 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
810 |
243 |
@Override... |
811 |
|
public void setScaleLeftWrapped(boolean b) |
812 |
|
{ |
813 |
243 |
scaleLeftWrapped = b; |
814 |
|
} |
815 |
|
|
816 |
|
|
817 |
|
|
818 |
|
|
819 |
|
@param |
820 |
|
|
821 |
|
|
822 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
823 |
241 |
@Override... |
824 |
|
public void setScaleRightWrapped(boolean b) |
825 |
|
{ |
826 |
241 |
scaleRightWrapped = b; |
827 |
|
} |
828 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
829 |
740 |
@Override... |
830 |
|
public void setSeqNameItalics(boolean italics) |
831 |
|
{ |
832 |
740 |
seqNameItalics = italics; |
833 |
|
} |
834 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
835 |
912 |
@Override... |
836 |
|
public void setShowAnnotation(boolean b) |
837 |
|
{ |
838 |
912 |
showAnnotation = b; |
839 |
|
} |
840 |
|
|
841 |
|
|
842 |
|
|
843 |
|
|
844 |
|
@param |
845 |
|
|
846 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
847 |
317 |
@Override... |
848 |
|
public void setShowBoxes(boolean state) |
849 |
|
{ |
850 |
317 |
showBoxes = state; |
851 |
|
} |
852 |
|
|
853 |
|
|
854 |
|
@param |
855 |
|
|
856 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
857 |
232 |
@Override... |
858 |
|
public void setShowColourText(boolean showColourText) |
859 |
|
{ |
860 |
232 |
this.showColourText = showColourText; |
861 |
|
} |
862 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
863 |
232 |
@Override... |
864 |
|
public void setShowHiddenMarkers(boolean show) |
865 |
|
{ |
866 |
232 |
showHiddenMarkers = show; |
867 |
|
} |
868 |
|
|
869 |
|
|
870 |
|
|
871 |
|
|
872 |
|
@param |
873 |
|
|
874 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
875 |
826 |
@Override... |
876 |
|
public void setShowJVSuffix(boolean b) |
877 |
|
{ |
878 |
826 |
showJVSuffix = b; |
879 |
|
} |
880 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
881 |
232 |
@Override... |
882 |
|
public void setShowSequenceFeaturesHeight(boolean selected) |
883 |
|
{ |
884 |
232 |
showSeqFeaturesHeight = selected; |
885 |
|
|
886 |
|
} |
887 |
|
|
888 |
|
|
889 |
|
|
890 |
|
|
891 |
|
@param |
892 |
|
|
893 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
894 |
373 |
@Override... |
895 |
|
public void setShowSequenceFeatures(boolean b) |
896 |
|
{ |
897 |
373 |
showSequenceFeatures = b; |
898 |
|
} |
899 |
|
|
900 |
|
|
901 |
|
|
902 |
|
|
903 |
|
@param |
904 |
|
|
905 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
906 |
317 |
@Override... |
907 |
|
public void setShowText(boolean state) |
908 |
|
{ |
909 |
317 |
showText = state; |
910 |
|
} |
911 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
912 |
825 |
@Override... |
913 |
|
public void setShowUnconserved(boolean showunconserved) |
914 |
|
{ |
915 |
825 |
showUnconserved = showunconserved; |
916 |
|
} |
917 |
|
|
918 |
|
|
919 |
|
@param |
920 |
|
|
921 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
922 |
317 |
@Override... |
923 |
|
public void setTextColour(Color textColour) |
924 |
|
{ |
925 |
317 |
this.textColour = textColour; |
926 |
|
} |
927 |
|
|
928 |
|
|
929 |
|
@param |
930 |
|
|
931 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
932 |
317 |
@Override... |
933 |
|
public void setTextColour2(Color textColour2) |
934 |
|
{ |
935 |
317 |
this.textColour2 = textColour2; |
936 |
|
} |
937 |
|
|
938 |
|
|
939 |
|
|
940 |
|
|
941 |
|
@param |
942 |
|
|
943 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
944 |
338 |
@Override... |
945 |
|
public void setThreshold(int thresh) |
946 |
|
{ |
947 |
338 |
threshold = thresh; |
948 |
|
} |
949 |
|
|
950 |
|
|
951 |
|
@param |
952 |
|
|
953 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
954 |
317 |
@Override... |
955 |
|
public void setThresholdTextColour(int thresholdTextColour) |
956 |
|
{ |
957 |
317 |
this.thresholdTextColour = thresholdTextColour; |
958 |
|
} |
959 |
|
|
960 |
|
|
961 |
|
|
962 |
|
|
963 |
|
@param |
964 |
|
|
965 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
966 |
837 |
@Override... |
967 |
|
public void setWrapAlignment(boolean state) |
968 |
|
{ |
969 |
837 |
wrapAlignment = state; |
970 |
|
} |
971 |
|
|
972 |
|
|
973 |
|
|
974 |
|
|
975 |
|
@param |
976 |
|
|
977 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
978 |
924 |
@Override... |
979 |
|
public void setWrappedWidth(int w) |
980 |
|
{ |
981 |
924 |
this.wrappedWidth = w; |
982 |
|
} |
983 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
984 |
3 |
@Override... |
985 |
|
public boolean sameStyle(ViewStyleI that) |
986 |
|
{ |
987 |
3 |
return this.equals(that); |
988 |
|
} |
989 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
990 |
330 |
@Override... |
991 |
|
public String getFontName() |
992 |
|
{ |
993 |
330 |
return fontName; |
994 |
|
} |
995 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
996 |
388 |
@Override... |
997 |
|
public int getFontSize() |
998 |
|
{ |
999 |
388 |
return fontSize; |
1000 |
|
} |
1001 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1002 |
386 |
@Override... |
1003 |
|
public int getFontStyle() |
1004 |
|
{ |
1005 |
386 |
return fontStyle; |
1006 |
|
} |
1007 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1008 |
914 |
@Override... |
1009 |
|
public void setFontName(String name) |
1010 |
|
{ |
1011 |
914 |
fontName = name; |
1012 |
|
} |
1013 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1014 |
914 |
@Override... |
1015 |
|
public void setFontSize(int size) |
1016 |
|
{ |
1017 |
914 |
fontSize = size; |
1018 |
|
|
1019 |
|
} |
1020 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1021 |
914 |
@Override... |
1022 |
|
public void setFontStyle(int style) |
1023 |
|
{ |
1024 |
914 |
fontStyle = style; |
1025 |
|
} |
1026 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1027 |
7122 |
@Override... |
1028 |
|
public int getIdWidth() |
1029 |
|
{ |
1030 |
7122 |
return idWidth; |
1031 |
|
} |
1032 |
|
|
1033 |
|
|
1034 |
|
@param |
1035 |
|
|
1036 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1037 |
1191 |
@Override... |
1038 |
|
public void setIdWidth(int idWidth) |
1039 |
|
{ |
1040 |
1191 |
this.idWidth = idWidth; |
1041 |
|
} |
1042 |
|
|
1043 |
|
|
1044 |
|
@return |
1045 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1046 |
994 |
@Override... |
1047 |
|
public boolean isCentreColumnLabels() |
1048 |
|
{ |
1049 |
994 |
return centreColumnLabels; |
1050 |
|
} |
1051 |
|
|
1052 |
|
|
1053 |
|
@param |
1054 |
|
|
1055 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1056 |
825 |
@Override... |
1057 |
|
public void setCentreColumnLabels(boolean centreColumnLabels) |
1058 |
|
{ |
1059 |
825 |
this.centreColumnLabels = centreColumnLabels; |
1060 |
|
} |
1061 |
|
|
1062 |
|
|
1063 |
|
@return |
1064 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1065 |
992 |
@Override... |
1066 |
|
public boolean isShowDBRefs() |
1067 |
|
{ |
1068 |
992 |
return showdbrefs; |
1069 |
|
} |
1070 |
|
|
1071 |
|
|
1072 |
|
@param |
1073 |
|
|
1074 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1075 |
825 |
@Override... |
1076 |
|
public void setShowDBRefs(boolean showdbrefs) |
1077 |
|
{ |
1078 |
825 |
this.showdbrefs = showdbrefs; |
1079 |
|
} |
1080 |
|
|
1081 |
|
|
1082 |
|
@return |
1083 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1084 |
986 |
@Override... |
1085 |
|
public boolean isShowNPFeats() |
1086 |
|
{ |
1087 |
986 |
return shownpfeats; |
1088 |
|
} |
1089 |
|
|
1090 |
|
|
1091 |
|
@param |
1092 |
|
|
1093 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1094 |
825 |
@Override... |
1095 |
|
public void setShowNPFeats(boolean shownpfeats) |
1096 |
|
{ |
1097 |
825 |
this.shownpfeats = shownpfeats; |
1098 |
|
} |
1099 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1100 |
335 |
@Override... |
1101 |
|
public boolean isScaleProteinAsCdna() |
1102 |
|
{ |
1103 |
335 |
return this.scaleProteinAsCdna; |
1104 |
|
} |
1105 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1106 |
825 |
@Override... |
1107 |
|
public void setScaleProteinAsCdna(boolean b) |
1108 |
|
{ |
1109 |
825 |
this.scaleProteinAsCdna = b; |
1110 |
|
} |
1111 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1112 |
284 |
@Override... |
1113 |
|
public boolean isProteinFontAsCdna() |
1114 |
|
{ |
1115 |
284 |
return proteinFontAsCdna; |
1116 |
|
} |
1117 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1118 |
232 |
@Override... |
1119 |
|
public void setProteinFontAsCdna(boolean b) |
1120 |
|
{ |
1121 |
232 |
proteinFontAsCdna = b; |
1122 |
|
} |
1123 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1124 |
317 |
@Override... |
1125 |
|
public void setShowComplementFeatures(boolean b) |
1126 |
|
{ |
1127 |
317 |
showComplementFeatures = b; |
1128 |
|
} |
1129 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1130 |
400420 |
@Override... |
1131 |
|
public boolean isShowComplementFeatures() |
1132 |
|
{ |
1133 |
400475 |
return showComplementFeatures; |
1134 |
|
} |
1135 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1136 |
317 |
@Override... |
1137 |
|
public void setShowComplementFeaturesOnTop(boolean b) |
1138 |
|
{ |
1139 |
317 |
showComplementFeaturesOnTop = b; |
1140 |
|
} |
1141 |
|
|
|
|
| 100% |
Uncovered Elements: 0 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
1142 |
307 |
@Override... |
1143 |
|
public boolean isShowComplementFeaturesOnTop() |
1144 |
|
{ |
1145 |
307 |
return showComplementFeaturesOnTop; |
1146 |
|
} |
1147 |
|
} |