Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
Log4jTest	39	44	16	0.7812578.1%	Show methods
Log4jTest.Worker	43	10	7	0.7575%	Show methods

Class Log4jTest

Class Log4jTest	Line # 39	Total Statements 44	Complexity 16	TOTAL Coverage 0.7812578.1%
getClassPath() : String   getClassPath() : String	9999	9.09	4.04	0.6923077 0.692307769.2%
getJalviewDesktopRunner(String) : Worker   getJalviewDesktopRunner(String) : Worker	123123	15.015	3.03	0.88235295 0.8823529588.2%
initialize() : void   initialize() : void	152152	1.01	1.01	1.0 1.0100%
testLog4j() : void   testLog4j() : void	158158	19.019	8.08	0.7241379 0.724137972.4%

 

Class Log4jTest.Worker

Class Log4jTest.Worker	Line # 43	Total Statements 10	Complexity 7	TOTAL Coverage 0.7575%
Worker(Process)   Worker(Process)	5353	1.01	1.01	1.0 1.0100%
run() : void   run() : void	5858	5.05	2.02	0.6 0.660%
getOutputReader() : BufferedReader   getOutputReader() : BufferedReader	7272	1.01	1.01	0.0 0.00%
setOutputReader(BufferedReader) : void   setOutputReader(BufferedReader) : void	7777	1.01	1.01	1.0 1.0100%
getErrorReader() : BufferedReader   getErrorReader() : BufferedReader	8282	1.01	1.01	1.0 1.0100%
setErrorReader(BufferedReader) : void   setErrorReader(BufferedReader) : void	8787	1.01	1.01	1.0 1.0100%

 

Contributing tests

Contributing tests

Select all

	Test contribution	Test	Result	Actions
	0.75	jalview.util.Log4jTest.testLog4jjalview.util.Log4jTest.testLog4j	1PASS

 

Source view

1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.util;
22
23		import static org.testng.Assert.assertNotNull;
24
25		import java.io.BufferedReader;
26		import java.io.File;
27		import java.io.IOException;
28		import java.io.InputStreamReader;
29		import java.util.concurrent.TimeUnit;
30
31		import org.testng.Assert;
32		import org.testng.annotations.BeforeTest;
33		import org.testng.annotations.Test;
34
35		import io.github.classgraph.ClassGraph;
36		import io.github.classgraph.ScanResult;
37		import jalview.bin.Console;
38
		78.1% Uncovered Elements: 14 (64) Complexity: 16 Complexity Density: 0.36
39		public class Log4jTest
40		{
41		private static final int TIMEOUT = 10;
42
		75% Uncovered Elements: 4 (16) Complexity: 7 Complexity Density: 0.7
43		private static class Worker extends Thread
44		{
45		private final Process process;
46
47		private BufferedReader outputReader;
48
49		private BufferedReader errorReader;
50
51		private boolean exited;
52
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
53	1	private Worker(Process process)...
54		{
55	1	this.process = process;
56		}
57
		60% Uncovered Elements: 2 (5) Complexity: 2 Complexity Density: 0.4
58	1	@Override...
59		public void run()
60		{
61	1	try
62		{
63	1	exited = process.waitFor(TIMEOUT, TimeUnit.SECONDS);
64		} catch (InterruptedException ignore)
65		{
66	1	return;
67		}
68	0	this.interrupt();
69	0	this.process.destroy();
70		}
71
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
72	0	public BufferedReader getOutputReader()...
73		{
74	0	return outputReader;
75		}
76
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
77	1	public void setOutputReader(BufferedReader outputReader)...
78		{
79	1	this.outputReader = outputReader;
80		}
81
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
82	3	public BufferedReader getErrorReader()...
83		{
84	3	return errorReader;
85		}
86
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
87	1	public void setErrorReader(BufferedReader errorReader)...
88		{
89	1	this.errorReader = errorReader;
90		}
91		}
92
93		private static ClassGraph scanner = null;
94
95		private static String classpath = null;
96
97		private static String java_exe = null;
98
		69.2% Uncovered Elements: 4 (13) Complexity: 4 Complexity Density: 0.44
99	1	public synchronized static String getClassPath()...
100		{
101	1	if (scanner == null)
102		{
103	1	scanner = new ClassGraph();
104	1	ScanResult scan = scanner.scan();
105	1	classpath = scan.getClasspath();
106	1	java_exe = System.getProperty("java.home") + File.separator + "bin"
107		+ File.separator + "java";
108
109		}
110	1	while (classpath == null)
111		{
112	0	try
113		{
114	0	Thread.sleep(10);
115		} catch (InterruptedException x)
116		{
117
118		}
119		}
120	1	return classpath;
121		}
122
		88.2% Uncovered Elements: 2 (17) Complexity: 3 Complexity Density: 0.2
123	1	private Worker getJalviewDesktopRunner(String appArgs)...
124		{
125	1	String classpath = getClassPath();
126	1	String cmd = java_exe + " " + " -classpath " + classpath + " "
127		+ " jalview.bin.Jalview " + " "
128		+ "--props=test/jalview/util/log4jTestProps.jvprops " + appArgs;
129	1	Process proc = null;
130	1	Worker worker = null;
131	1	try
132		{
133	1	proc = Runtime.getRuntime().exec(cmd);
134		} catch (Throwable e)
135		{
136	0	e.printStackTrace();
137		}
138	1	if (proc != null)
139		{
140	1	BufferedReader outputReader = new BufferedReader(
141		new InputStreamReader(proc.getInputStream()));
142	1	BufferedReader errorReader = new BufferedReader(
143		new InputStreamReader(proc.getErrorStream()));
144	1	worker = new Worker(proc);
145	1	worker.start();
146	1	worker.setOutputReader(outputReader);
147	1	worker.setErrorReader(errorReader);
148		}
149	1	return worker;
150		}
151
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
152	4	@BeforeTest(alwaysRun = true)...
153		public void initialize()
154		{
155	4	new Log4jTest();
156		}
157
		72.4% Uncovered Elements: 8 (29) Complexity: 8 Complexity Density: 0.42 1PASS
158	1	@Test(groups = { "Functional" })...
159		public void testLog4j()
160		{
161	1	String appArgs = " -open examples/uniref50.fa -nosplash -nonews -noquestionnaire -nousagestats -nowebservicediscovery";
162
163	1	Worker worker = getJalviewDesktopRunner(appArgs);
164	1	assertNotNull(worker, "worker is null");
165
166	1	String ln = null;
167	1	int count = 0;
168	1	boolean logTestFound = false;
169	1	try
170		{
171	?	while ((ln = worker.getErrorReader().readLine()) != null)
172		{
173	3	if (++count > 500)
174		{
175	0	break;
176		}
177	3	if (ln.contains(Console.LOGGING_TEST_MESSAGE))
178		{
179	1	logTestFound = true;
180	1	break;
181		}
182		}
183		} catch (IOException e)
184		{
185	0	e.printStackTrace();
186		}
187	1	if (worker != null && worker.exited == false)
188		{
189	1	worker.interrupt();
190	1	worker.process.destroy();
191		}
192	1	if (!logTestFound)
193		{
194	0	Assert.fail("Did not find Log4j Test message line '"
195		+ Console.LOGGING_TEST_MESSAGE + "'");
196		}
197		}
198
199		}