Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
FeatureSource	33	8	6	0.7142857371.4%	Show methods

Class FeatureSource

Class FeatureSource	Line # 33	Total Statements 8	Complexity 6	TOTAL Coverage 0.7142857371.4%
FeatureSource(String)   FeatureSource(String)	4646	3.03	1.01	1.0 1.0100%
getName() : String   getName() : String	5656	1.01	1.01	0.0 0.00%
getAttributeName(String) : String   getAttributeName(String) : String	6565	1.01	1.01	1.0 1.0100%
getAttributeType(String) : FeatureAttributeType   getAttributeType(String) : FeatureAttributeType	7474	1.01	1.01	0.0 0.00%
setAttributeName(String,String) : void   setAttributeName(String,String) : void	8383	1.01	1.01	1.0 1.0100%
setAttributeType(String,FeatureAttributeType) : void   setAttributeType(String,FeatureAttributeType) : void	9292	1.01	1.01	1.0 1.0100%

 

Contributing tests

Contributing tests

Select all

	Test contribution	Test	Result	Actions
	0.71428573	jalview.io.vcf.VCFLoaderTest.testDoLoadjalview.io.vcf.VCFLoaderTest.testDoLoad	1PASS
	0.71428573	jalview.io.vcf.VCFLoaderTest.testDoLoad_reverseStrandjalview.io.vcf.VCFLoaderTest.testDoLoad_reverseStrand	1PASS
	0.71428573	jalview.io.vcf.VCFLoaderTest.testDoLoad_vepCsqjalview.io.vcf.VCFLoaderTest.testDoLoad_vepCsq	1PASS
	0.71428573	jalview.io.vcf.VCFLoaderTest.testLoadVCFContigjalview.io.vcf.VCFLoaderTest.testLoadVCFContig	1PASS

 

Source view

1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.datamodel.features;
22
23		import java.util.HashMap;
24		import java.util.Map;
25
26		/**
27		* A class to model one source of feature data, including metadata about
28		* attributes of features
29		*
30		* @author gmcarstairs
31		*
32		*/
		71.4% Uncovered Elements: 4 (14) Complexity: 6 Complexity Density: 0.75
33		public class FeatureSource implements FeatureSourceI
34		{
35		private String name;
36
37		private Map<String, String> attributeNames;
38
39		private Map<String, FeatureAttributeType> attributeTypes;
40
41		/**
42		* Constructor
43		*
44		* @param theName
45		*/
		100% Uncovered Elements: 0 (3) Complexity: 1 Complexity Density: 0.33
46	4	public FeatureSource(String theName)...
47		{
48	4	this.name = theName;
49	4	attributeNames = new HashMap<>();
50	4	attributeTypes = new HashMap<>();
51		}
52
53		/**
54		* {@inheritDoc}
55		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
56	0	@Override...
57		public String getName()
58		{
59	0	return name;
60		}
61
62		/**
63		* {@inheritDoc}
64		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
65	289	@Override...
66		public String getAttributeName(String attributeId)
67		{
68	289	return attributeNames.get(attributeId);
69		}
70
71		/**
72		* {@inheritDoc}
73		*/
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
74	0	@Override...
75		public FeatureAttributeType getAttributeType(String attributeId)
76		{
77	0	return attributeTypes.get(attributeId);
78		}
79
80		/**
81		* {@inheritDoc}
82		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
83	13	@Override...
84		public void setAttributeName(String id, String attName)
85		{
86	13	attributeNames.put(id, attName);
87		}
88
89		/**
90		* {@inheritDoc}
91		*/
		100% Uncovered Elements: 0 (1) Complexity: 1 Complexity Density: 1
92	13	@Override...
93		public void setAttributeType(String id, FeatureAttributeType type)
94		{
95	13	attributeTypes.put(id, type);
96		}
97
98		}