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package ext.vamsas; |
22 |
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|
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| 0% |
Uncovered Elements: 223 (223) |
Complexity: 33 |
Complexity Density: 0.19 |
|
23 |
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public class JpredSoapBindingStub extends org.apache.axis.client.Stub |
24 |
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implements ext.vamsas.Jpred |
25 |
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{ |
26 |
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private java.util.Vector cachedSerClasses = new java.util.Vector(); |
27 |
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|
28 |
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private java.util.Vector cachedSerQNames = new java.util.Vector(); |
29 |
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|
30 |
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private java.util.Vector cachedSerFactories = new java.util.Vector(); |
31 |
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32 |
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private java.util.Vector cachedDeserFactories = new java.util.Vector(); |
33 |
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|
34 |
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static org.apache.axis.description.OperationDesc[] _operations; |
35 |
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|
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| 0% |
Uncovered Elements: 2 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
36 |
0 |
static... |
37 |
|
{ |
38 |
0 |
_operations = new org.apache.axis.description.OperationDesc[4]; |
39 |
0 |
_initOperationDesc1(); |
40 |
|
} |
41 |
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|
|
| 0% |
Uncovered Elements: 37 (37) |
Complexity: 1 |
Complexity Density: 0.03 |
|
42 |
0 |
private static void _initOperationDesc1()... |
43 |
|
{ |
44 |
0 |
org.apache.axis.description.OperationDesc oper; |
45 |
0 |
oper = new org.apache.axis.description.OperationDesc(); |
46 |
0 |
oper.setName("predict"); |
47 |
0 |
oper.addParameter(new javax.xml.namespace.QName("", "seq"), |
48 |
|
new javax.xml.namespace.QName("simple.objects.vamsas", |
49 |
|
"Sequence"), |
50 |
|
vamsas.objects.simple.Sequence.class, |
51 |
|
org.apache.axis.description.ParameterDesc.IN, false, false); |
52 |
0 |
oper.setReturnType(new javax.xml.namespace.QName( |
53 |
|
"http://www.w3.org/2001/XMLSchema", "string")); |
54 |
0 |
oper.setReturnClass(java.lang.String.class); |
55 |
0 |
oper.setReturnQName(new javax.xml.namespace.QName("", "predictReturn")); |
56 |
0 |
oper.setStyle(org.apache.axis.constants.Style.RPC); |
57 |
0 |
oper.setUse(org.apache.axis.constants.Use.ENCODED); |
58 |
0 |
_operations[0] = oper; |
59 |
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|
60 |
0 |
oper = new org.apache.axis.description.OperationDesc(); |
61 |
0 |
oper.setName("predictOnMsa"); |
62 |
0 |
oper.addParameter(new javax.xml.namespace.QName("", "msf"), |
63 |
|
new javax.xml.namespace.QName("http://simple.objects.vamsas", |
64 |
|
"Msfalignment"), |
65 |
|
vamsas.objects.simple.Msfalignment.class, |
66 |
|
org.apache.axis.description.ParameterDesc.IN, false, false); |
67 |
0 |
oper.setReturnType(new javax.xml.namespace.QName( |
68 |
|
"http://www.w3.org/2001/XMLSchema", "string")); |
69 |
0 |
oper.setReturnClass(java.lang.String.class); |
70 |
0 |
oper.setReturnQName( |
71 |
|
new javax.xml.namespace.QName("", "predictOnMsaReturn")); |
72 |
0 |
oper.setStyle(org.apache.axis.constants.Style.RPC); |
73 |
0 |
oper.setUse(org.apache.axis.constants.Use.ENCODED); |
74 |
0 |
_operations[1] = oper; |
75 |
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|
76 |
0 |
oper = new org.apache.axis.description.OperationDesc(); |
77 |
0 |
oper.setName("getpredict"); |
78 |
0 |
oper.addParameter(new javax.xml.namespace.QName("", "job_id"), |
79 |
|
new javax.xml.namespace.QName( |
80 |
|
"http://www.w3.org/2001/XMLSchema", "string"), |
81 |
|
java.lang.String.class, |
82 |
|
org.apache.axis.description.ParameterDesc.IN, false, false); |
83 |
0 |
oper.setReturnType(new javax.xml.namespace.QName( |
84 |
|
"http://simple.objects.vamsas", "Secstructpred")); |
85 |
0 |
oper.setReturnClass(vamsas.objects.simple.Secstructpred.class); |
86 |
0 |
oper.setReturnQName( |
87 |
|
new javax.xml.namespace.QName("", "getpredictReturn")); |
88 |
0 |
oper.setStyle(org.apache.axis.constants.Style.RPC); |
89 |
0 |
oper.setUse(org.apache.axis.constants.Use.ENCODED); |
90 |
0 |
_operations[2] = oper; |
91 |
|
|
92 |
0 |
oper = new org.apache.axis.description.OperationDesc(); |
93 |
0 |
oper.setName("getresult"); |
94 |
0 |
oper.addParameter(new javax.xml.namespace.QName("", "job_id"), |
95 |
|
new javax.xml.namespace.QName( |
96 |
|
"http://www.w3.org/2001/XMLSchema", "string"), |
97 |
|
java.lang.String.class, |
98 |
|
org.apache.axis.description.ParameterDesc.IN, false, false); |
99 |
0 |
oper.setReturnType(new javax.xml.namespace.QName( |
100 |
|
"http://simple.objects.vamsas", "JpredResult")); |
101 |
0 |
oper.setReturnClass(vamsas.objects.simple.JpredResult.class); |
102 |
0 |
oper.setReturnQName( |
103 |
|
new javax.xml.namespace.QName("", "getresultReturn")); |
104 |
0 |
oper.setStyle(org.apache.axis.constants.Style.RPC); |
105 |
0 |
oper.setUse(org.apache.axis.constants.Use.ENCODED); |
106 |
0 |
_operations[3] = oper; |
107 |
|
|
108 |
|
} |
109 |
|
|
|
|
| 0% |
Uncovered Elements: 1 (1) |
Complexity: 1 |
Complexity Density: 1 |
|
110 |
0 |
public JpredSoapBindingStub() throws org.apache.axis.AxisFault... |
111 |
|
{ |
112 |
0 |
this(null); |
113 |
|
} |
114 |
|
|
|
|
| 0% |
Uncovered Elements: 2 (2) |
Complexity: 1 |
Complexity Density: 0.5 |
|
115 |
0 |
public JpredSoapBindingStub(java.net.URL endpointURL,... |
116 |
|
javax.xml.rpc.Service service) throws org.apache.axis.AxisFault |
117 |
|
{ |
118 |
0 |
this(service); |
119 |
0 |
super.cachedEndpoint = endpointURL; |
120 |
|
} |
121 |
|
|
|
|
| 0% |
Uncovered Elements: 39 (39) |
Complexity: 2 |
Complexity Density: 0.05 |
|
122 |
0 |
public JpredSoapBindingStub(javax.xml.rpc.Service service)... |
123 |
|
throws org.apache.axis.AxisFault |
124 |
|
{ |
125 |
0 |
if (service == null) |
126 |
|
{ |
127 |
0 |
super.service = new org.apache.axis.client.Service(); |
128 |
|
} |
129 |
|
else |
130 |
|
{ |
131 |
0 |
super.service = service; |
132 |
|
} |
133 |
0 |
java.lang.Class cls; |
134 |
0 |
javax.xml.namespace.QName qName; |
135 |
0 |
java.lang.Class beansf = org.apache.axis.encoding.ser.BeanSerializerFactory.class; |
136 |
0 |
java.lang.Class beandf = org.apache.axis.encoding.ser.BeanDeserializerFactory.class; |
137 |
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|
138 |
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|
139 |
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|
140 |
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|
141 |
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142 |
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143 |
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144 |
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145 |
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146 |
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147 |
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148 |
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149 |
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|
150 |
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|
151 |
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|
152 |
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|
153 |
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|
154 |
0 |
qName = new javax.xml.namespace.QName("http://simple.objects.vamsas", |
155 |
|
"JpredResult"); |
156 |
0 |
cachedSerQNames.add(qName); |
157 |
0 |
cls = vamsas.objects.simple.JpredResult.class; |
158 |
0 |
cachedSerClasses.add(cls); |
159 |
0 |
cachedSerFactories.add(beansf); |
160 |
0 |
cachedDeserFactories.add(beandf); |
161 |
|
|
162 |
0 |
qName = new javax.xml.namespace.QName("simple.objects.vamsas", |
163 |
|
"Result"); |
164 |
0 |
cachedSerQNames.add(qName); |
165 |
0 |
cls = vamsas.objects.simple.Result.class; |
166 |
0 |
cachedSerClasses.add(cls); |
167 |
0 |
cachedSerFactories.add(beansf); |
168 |
0 |
cachedDeserFactories.add(beandf); |
169 |
|
|
170 |
0 |
qName = new javax.xml.namespace.QName("http://simple.objects.vamsas", |
171 |
|
"Secstructpred"); |
172 |
0 |
cachedSerQNames.add(qName); |
173 |
0 |
cls = vamsas.objects.simple.Secstructpred.class; |
174 |
0 |
cachedSerClasses.add(cls); |
175 |
0 |
cachedSerFactories.add(beansf); |
176 |
0 |
cachedDeserFactories.add(beandf); |
177 |
|
|
178 |
0 |
qName = new javax.xml.namespace.QName("http://simple.objects.vamsas", |
179 |
|
"Msfalignment"); |
180 |
0 |
cachedSerQNames.add(qName); |
181 |
0 |
cls = vamsas.objects.simple.Msfalignment.class; |
182 |
0 |
cachedSerClasses.add(cls); |
183 |
0 |
cachedSerFactories.add(beansf); |
184 |
0 |
cachedDeserFactories.add(beandf); |
185 |
|
|
186 |
0 |
qName = new javax.xml.namespace.QName("simple.objects.vamsas", |
187 |
|
"Sequence"); |
188 |
0 |
cachedSerQNames.add(qName); |
189 |
0 |
cls = vamsas.objects.simple.Sequence.class; |
190 |
0 |
cachedSerClasses.add(cls); |
191 |
0 |
cachedSerFactories.add(beansf); |
192 |
0 |
cachedDeserFactories.add(beandf); |
193 |
|
|
194 |
|
} |
195 |
|
|
|
|
| 0% |
Uncovered Elements: 48 (48) |
Complexity: 11 |
Complexity Density: 0.37 |
|
196 |
0 |
protected org.apache.axis.client.Call createCall()... |
197 |
|
throws java.rmi.RemoteException |
198 |
|
{ |
199 |
0 |
try |
200 |
|
{ |
201 |
0 |
org.apache.axis.client.Call _call = (org.apache.axis.client.Call) super.service |
202 |
|
.createCall(); |
203 |
0 |
if (super.maintainSessionSet) |
204 |
|
{ |
205 |
0 |
_call.setMaintainSession(super.maintainSession); |
206 |
|
} |
207 |
0 |
if (super.cachedUsername != null) |
208 |
|
{ |
209 |
0 |
_call.setUsername(super.cachedUsername); |
210 |
|
} |
211 |
0 |
if (super.cachedPassword != null) |
212 |
|
{ |
213 |
0 |
_call.setPassword(super.cachedPassword); |
214 |
|
} |
215 |
0 |
if (super.cachedEndpoint != null) |
216 |
|
{ |
217 |
0 |
_call.setTargetEndpointAddress(super.cachedEndpoint); |
218 |
|
} |
219 |
0 |
if (super.cachedTimeout != null) |
220 |
|
{ |
221 |
0 |
_call.setTimeout(super.cachedTimeout); |
222 |
|
} |
223 |
0 |
if (super.cachedPortName != null) |
224 |
|
{ |
225 |
0 |
_call.setPortName(super.cachedPortName); |
226 |
|
} |
227 |
0 |
java.util.Enumeration keys = super.cachedProperties.keys(); |
228 |
0 |
while (keys.hasMoreElements()) |
229 |
|
{ |
230 |
0 |
java.lang.String key = (java.lang.String) keys.nextElement(); |
231 |
0 |
_call.setProperty(key, super.cachedProperties.get(key)); |
232 |
|
} |
233 |
|
|
234 |
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|
235 |
|
|
236 |
|
|
237 |
|
|
238 |
0 |
synchronized (this) |
239 |
|
{ |
240 |
0 |
if (firstCall()) |
241 |
|
{ |
242 |
|
|
243 |
0 |
_call.setSOAPVersion( |
244 |
|
org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS); |
245 |
0 |
_call.setEncodingStyle(org.apache.axis.Constants.URI_SOAP11_ENC); |
246 |
0 |
for (int i = 0; i < cachedSerFactories.size(); ++i) |
247 |
|
{ |
248 |
0 |
java.lang.Class cls = (java.lang.Class) cachedSerClasses.get(i); |
249 |
0 |
javax.xml.namespace.QName qName = (javax.xml.namespace.QName) cachedSerQNames |
250 |
|
.get(i); |
251 |
0 |
java.lang.Class sf = (java.lang.Class) cachedSerFactories |
252 |
|
.get(i); |
253 |
0 |
java.lang.Class df = (java.lang.Class) cachedDeserFactories |
254 |
|
.get(i); |
255 |
0 |
_call.registerTypeMapping(cls, qName, sf, df, false); |
256 |
|
} |
257 |
|
} |
258 |
|
} |
259 |
0 |
return _call; |
260 |
|
} catch (java.lang.Throwable _t) |
261 |
|
{ |
262 |
0 |
throw new org.apache.axis.AxisFault( |
263 |
|
"Failure trying to get the Call object", _t); |
264 |
|
} |
265 |
|
} |
266 |
|
|
|
|
| 0% |
Uncovered Elements: 21 (21) |
Complexity: 4 |
Complexity Density: 0.24 |
|
267 |
0 |
public java.lang.String predict(vamsas.objects.simple.Sequence seq)... |
268 |
|
throws java.rmi.RemoteException |
269 |
|
{ |
270 |
0 |
if (super.cachedEndpoint == null) |
271 |
|
{ |
272 |
0 |
throw new org.apache.axis.NoEndPointException(); |
273 |
|
} |
274 |
0 |
org.apache.axis.client.Call _call = createCall(); |
275 |
0 |
_call.setOperation(_operations[0]); |
276 |
0 |
_call.setUseSOAPAction(true); |
277 |
0 |
_call.setSOAPActionURI(""); |
278 |
0 |
_call.setSOAPVersion( |
279 |
|
org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS); |
280 |
0 |
_call.setOperationName( |
281 |
|
new javax.xml.namespace.QName("vamsas", "predict")); |
282 |
|
|
283 |
0 |
setRequestHeaders(_call); |
284 |
0 |
setAttachments(_call); |
285 |
0 |
java.lang.Object _resp = _call.invoke(new java.lang.Object[] { seq }); |
286 |
|
|
287 |
0 |
if (_resp instanceof java.rmi.RemoteException) |
288 |
|
{ |
289 |
0 |
throw (java.rmi.RemoteException) _resp; |
290 |
|
} |
291 |
|
else |
292 |
|
{ |
293 |
0 |
extractAttachments(_call); |
294 |
0 |
try |
295 |
|
{ |
296 |
0 |
return (java.lang.String) _resp; |
297 |
|
} catch (java.lang.Exception _exception) |
298 |
|
{ |
299 |
0 |
return (java.lang.String) org.apache.axis.utils.JavaUtils |
300 |
|
.convert(_resp, java.lang.String.class); |
301 |
|
} |
302 |
|
} |
303 |
|
} |
304 |
|
|
|
|
| 0% |
Uncovered Elements: 21 (21) |
Complexity: 4 |
Complexity Density: 0.24 |
|
305 |
0 |
public java.lang.String predictOnMsa(... |
306 |
|
vamsas.objects.simple.Msfalignment msf) |
307 |
|
throws java.rmi.RemoteException |
308 |
|
{ |
309 |
0 |
if (super.cachedEndpoint == null) |
310 |
|
{ |
311 |
0 |
throw new org.apache.axis.NoEndPointException(); |
312 |
|
} |
313 |
0 |
org.apache.axis.client.Call _call = createCall(); |
314 |
0 |
_call.setOperation(_operations[1]); |
315 |
0 |
_call.setUseSOAPAction(true); |
316 |
0 |
_call.setSOAPActionURI(""); |
317 |
0 |
_call.setSOAPVersion( |
318 |
|
org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS); |
319 |
0 |
_call.setOperationName( |
320 |
|
new javax.xml.namespace.QName("vamsas", "predictOnMsa")); |
321 |
|
|
322 |
0 |
setRequestHeaders(_call); |
323 |
0 |
setAttachments(_call); |
324 |
0 |
java.lang.Object _resp = _call.invoke(new java.lang.Object[] { msf }); |
325 |
|
|
326 |
0 |
if (_resp instanceof java.rmi.RemoteException) |
327 |
|
{ |
328 |
0 |
throw (java.rmi.RemoteException) _resp; |
329 |
|
} |
330 |
|
else |
331 |
|
{ |
332 |
0 |
extractAttachments(_call); |
333 |
0 |
try |
334 |
|
{ |
335 |
0 |
return (java.lang.String) _resp; |
336 |
|
} catch (java.lang.Exception _exception) |
337 |
|
{ |
338 |
0 |
return (java.lang.String) org.apache.axis.utils.JavaUtils |
339 |
|
.convert(_resp, java.lang.String.class); |
340 |
|
} |
341 |
|
} |
342 |
|
} |
343 |
|
|
|
|
| 0% |
Uncovered Elements: 21 (21) |
Complexity: 4 |
Complexity Density: 0.24 |
|
344 |
0 |
public vamsas.objects.simple.Secstructpred getpredict(... |
345 |
|
java.lang.String job_id) throws java.rmi.RemoteException |
346 |
|
{ |
347 |
0 |
if (super.cachedEndpoint == null) |
348 |
|
{ |
349 |
0 |
throw new org.apache.axis.NoEndPointException(); |
350 |
|
} |
351 |
0 |
org.apache.axis.client.Call _call = createCall(); |
352 |
0 |
_call.setOperation(_operations[2]); |
353 |
0 |
_call.setUseSOAPAction(true); |
354 |
0 |
_call.setSOAPActionURI(""); |
355 |
0 |
_call.setSOAPVersion( |
356 |
|
org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS); |
357 |
0 |
_call.setOperationName( |
358 |
|
new javax.xml.namespace.QName("vamsas", "getpredict")); |
359 |
|
|
360 |
0 |
setRequestHeaders(_call); |
361 |
0 |
setAttachments(_call); |
362 |
0 |
java.lang.Object _resp = _call |
363 |
|
.invoke(new java.lang.Object[] |
364 |
|
{ job_id }); |
365 |
|
|
366 |
0 |
if (_resp instanceof java.rmi.RemoteException) |
367 |
|
{ |
368 |
0 |
throw (java.rmi.RemoteException) _resp; |
369 |
|
} |
370 |
|
else |
371 |
|
{ |
372 |
0 |
extractAttachments(_call); |
373 |
0 |
try |
374 |
|
{ |
375 |
0 |
return (vamsas.objects.simple.Secstructpred) _resp; |
376 |
|
} catch (java.lang.Exception _exception) |
377 |
|
{ |
378 |
0 |
return (vamsas.objects.simple.Secstructpred) org.apache.axis.utils.JavaUtils |
379 |
|
.convert(_resp, vamsas.objects.simple.Secstructpred.class); |
380 |
|
} |
381 |
|
} |
382 |
|
} |
383 |
|
|
|
|
| 0% |
Uncovered Elements: 21 (21) |
Complexity: 4 |
Complexity Density: 0.24 |
|
384 |
0 |
public vamsas.objects.simple.JpredResult getresult(... |
385 |
|
java.lang.String job_id) throws java.rmi.RemoteException |
386 |
|
{ |
387 |
0 |
if (super.cachedEndpoint == null) |
388 |
|
{ |
389 |
0 |
throw new org.apache.axis.NoEndPointException(); |
390 |
|
} |
391 |
0 |
org.apache.axis.client.Call _call = createCall(); |
392 |
0 |
_call.setOperation(_operations[3]); |
393 |
0 |
_call.setUseSOAPAction(true); |
394 |
0 |
_call.setSOAPActionURI(""); |
395 |
0 |
_call.setSOAPVersion( |
396 |
|
org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS); |
397 |
0 |
_call.setOperationName( |
398 |
|
new javax.xml.namespace.QName("vamsas", "getresult")); |
399 |
|
|
400 |
0 |
setRequestHeaders(_call); |
401 |
0 |
setAttachments(_call); |
402 |
0 |
java.lang.Object _resp = _call |
403 |
|
.invoke(new java.lang.Object[] |
404 |
|
{ job_id }); |
405 |
|
|
406 |
0 |
if (_resp instanceof java.rmi.RemoteException) |
407 |
|
{ |
408 |
0 |
throw (java.rmi.RemoteException) _resp; |
409 |
|
} |
410 |
|
else |
411 |
|
{ |
412 |
0 |
extractAttachments(_call); |
413 |
0 |
try |
414 |
|
{ |
415 |
0 |
return (vamsas.objects.simple.JpredResult) _resp; |
416 |
|
} catch (java.lang.Exception _exception) |
417 |
|
{ |
418 |
0 |
return (vamsas.objects.simple.JpredResult) org.apache.axis.utils.JavaUtils |
419 |
|
.convert(_resp, vamsas.objects.simple.JpredResult.class); |
420 |
|
} |
421 |
|
} |
422 |
|
} |
423 |
|
|
424 |
|
} |