Coverage Report
File ContactListProviderI.java
Coverage histogram
60% of files have more coverage
Classes
| Class | Line # | Actions | |||
|---|---|---|---|---|---|
| ContactListProviderI | 25 | 2 | 2 |
Contributing tests
Source view
| 1 | /* | |
| 2 | * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) | |
| 3 | * Copyright (C) $$Year-Rel$$ The Jalview Authors | |
| 4 | * | |
| 5 | * This file is part of Jalview. | |
| 6 | * | |
| 7 | * Jalview is free software: you can redistribute it and/or | |
| 8 | * modify it under the terms of the GNU General Public License | |
| 9 | * as published by the Free Software Foundation, either version 3 | |
| 10 | * of the License, or (at your option) any later version. | |
| 11 | * | |
| 12 | * Jalview is distributed in the hope that it will be useful, but | |
| 13 | * WITHOUT ANY WARRANTY; without even the implied warranty | |
| 14 | * of MERCHANTABILITY or FITNESS FOR A PARTICULAR | |
| 15 | * PURPOSE. See the GNU General Public License for more details. | |
| 16 | * | |
| 17 | * You should have received a copy of the GNU General Public License | |
| 18 | * along with Jalview. If not, see <http://www.gnu.org/licenses/>. | |
| 19 | * The Jalview Authors are detailed in the 'AUTHORS' file. | |
| 20 | */ | |
| 21 | package jalview.datamodel; | |
| 22 | ||
| 23 | import java.awt.Color; | |
| 24 | ||
| 25 | public interface ContactListProviderI | |
| 26 | { | |
| 27 | ||
| 28 | /** | |
| 29 | * | |
| 30 | * @return position index for this contact List (usually sequence position or | |
| 31 | * alignment column) | |
| 32 | */ | |
| 33 | int getPosition(); | |
| 34 | ||
| 35 | /** | |
| 36 | * dimension of list where getContactAt(column<getContactHeight()) may return | |
| 37 | * a value | |
| 38 | * | |
| 39 | * @return | |
| 40 | */ | |
| 41 | int getContactHeight(); | |
| 42 | ||
| 43 | /** | |
| 44 | * get a value representing contact at column for this site | |
| 45 | * | |
| 46 | * @param column | |
| 47 | * @return Double.NaN or a contact strength for this site | |
| 48 | */ | |
| 49 | double getContactAt(int column); | |
| 50 | ||
| 51 | /** | |
| 52 | * Return positions in local reference corresponding to cStart and cEnd in | |
| 53 | * matrix data. Positions are base 1 column indices for sequence associated | |
| 54 | * matrices. | |
| 55 | * | |
| 56 | * @param cStart | |
| 57 | * @param cEnd | |
| 58 | * @return int[] { start, end (inclusive) for each contiguous segment} | |
| 59 | */ | |
| 60 | 0 |  default int[] getMappedPositionsFor(int cStart, int cEnd) |
| 61 | { | |
| 62 | 0 | return new int[] { cStart, cEnd }; |
| 63 | } | |
| 64 | ||
| 65 | 0 | default Color getColourForGroup() |
| 66 | { | |
| 67 | 0 | return null; |
| 68 | } | |
| 69 | ||
| 70 | } |